G1522438


Basic Information

Item Value
gene id G1522438
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17856141 ~ 17860614 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1743080
GTAAACACCTACCTGTCCCAGAGTCCAACATGCTCTCTACTGGTTTGGTCCTGAGGACTCTGGAGGTGAAGGAGTGCCATCCTGCCCGCCACTGGACACGCTGCAGCTTACCACGCAGACCTGACATACTGAGGTCACAGGTCAGTGGTTAGAGGTCAAGGGTCAAGAGAGGGCTTTAGCTTTTTTTCTATTTTATCCTCCGGCGTTCACCTTTCCCACTCTCGTAAATAACGTTTATCCTTGTGAAGACGGGCTGAGTGGGAGAGAGTATGGGAGGAAGAAAGTGTCTTCTCTCTGGTAGTCAGGTGAGGGGGGGTGTCAGCAGTGCTTCATGGTGATATAGAAGTGTTCTCTGTTGTCTCAGGTGTCAATCTGTAACAGAAATGCTCATGtttttacacatacagtacaatacagctgATAGCATATGACACCATGTCTGTGTCTTGTCCACAGCTGTTTGACAGTTACAGTCACATTGGATATGGCTGGTTATCCATCctttactgtaaacacacacacacacacacacacacacatacacacacatacacacacatacacacacatacacacacacacacacatacacacacacacatacacacacatacacacacacacatacacacatacacacagcgagATGTGTGTTCCAGAATGAGTTTATACCTGAACACAGAGAACTAATTATCAGCTGGTCCTTGTAGACCTGTTGTTATAGCAACCATCTCATAACACCATGCCATAGAGGACAGTTCATATCcgtctgtatgtgtatgtgtgtgtgtatgtgtgtgtgtatgtgtatgtgtgtgtgtgtatgtgtatgtgtgtatgtgtatgtgtacgtgtatgtgtgtgtgtgtgtgtgtatgtgtatgtgtgtgtgtgtatgtgtatgtgtgtgtgtgtgcttgcatgcgttccagatgactgtgttgtgttgtaactTCCTGAGTCCTCATCACTTCCTGATTAGATCTGACCTGAGATGAACTCAGAGCTGATGGACTGTAAGGACTCAACTCCTCCACTCCCCCCAATCTGACAGAACACATTGTTCTGTTACAGacccacacaagcacacacaataTAATTACAGCCATAGACAAATAATTACAGGgtggtacatcccaaatggcaccctattcccgacatAGTGCACTTAGTCCAgagtactggtcaaaagtagagccctatagagggaacagggctctATTTGAGACATAGTCAAGGATTCAACCTTCGATCAACCCCTTGTCCTCCGCCCAGTCAGTCAACGACTGCACTCATAGAAGATGATTGAGTAAAACCATTTGGTCTAAAGTGAACAGGAGTTAATACACAGTCAGTATGTGCGTCCCGGGTAGGAAAATAACCTGCTCTGATGACTGCTATTACTGAcaacctctttccctctttcaatgagctttctctttctctgtttattTCTCTATTATTCCCCCTCTGTCTGCACTCAGGAAGAGAAGTCATTTATGTAAAGTGGGCCAACGCACCTCTCAATCATCGAGCACTACTCAATCAtcgaacactacacacacacgccTCTCAGCCATCAACCACTTAAACGAGGCCTGCAATTACCCAGCTGTTTAACCacagtggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtttcagtTTAACCACCAAACAAGGCACAATACAGGAGAGAGGTGGGTATGGCTATTGTCCCTGCAGAGTGTGGATAATAGAACATAAAGGATaagagaggagggatggtgatGGAGGGATGAGCAGCAGACTGATAAAACAGCTCATCTGTTCCCATCAGACACAGTATTGATCTCAAACACAATGCAATAGGATCTGTCCTCCCTAAAAAGAAGAACAGGTGTAAACAGCCCATTACAATGTCCAGCCATCCTCTGTCTTTCGatcggtctgtctgtccgtccgtctgcctGTTGGCATGCCTGTCCATCCATCTGTCTGTCATCTGGTTTCCTAGTCATCCACCATAATAATAAATTATTGTTATTCAATCAGCCAATCAATGGGCATGATTCATTGTTGTAAGAGAGTGGTTAGCTGTGTGTTCCAGCCAACATTCTGTCTGATTGACAGAACGCAAATCCTGATTCAGCTTCTGGAACTCAGTACCTTAATAAAGATAAGAGCCTCATTCAGTCCAATTTGGCAACCGATTCAGTCCAATCTGGCAACCGGCAATGTTCTGATATGGCAACCACTGGACTTCTAAGTAggtcagagtcagagagagggtaTGTAATCATTGAGTATAGGACCTGACTCAGGAGaaaggttctctctctcttcctttctttcagtctctctctctctttctctctccagtgcTGAGTTCAAGAGTGTAGTGAGAGTGGGAAAGACAGCTGGAACGCagccctccatctccctctctctcctctttccccccctctctctcctttctctctcccccctctgacctctctctctctctctctctctctgtccctctgaatCTGTGTTCCTTTGGATGGCCTTGTATCTGATAACTATAGTAACCATATTGCCAAACTGTGACACATATCTAAAAGGATTAGTAACCACACCAATACGCTGTACACAtcactagggcccagagtttattcacccttcctctcgctctctatctttcTATATATCTACGTGGCCTGTAGTCTGGTAGGGGGTGTGCTGCTGATGACGGAGATGCAGATGGctctgtgatggtgtgtgtgcatgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaggtgattGTACTAGCTTTTATGCACAGACAGGCTCTGTGACGTCAGTGAGGCTATCTGCCATTCACAAACCAAATCAggttgtgtgtgttcttgtgagaGGGTGAGTCACACATGCAATAGAACAAGGTTTATGAGatcatctatacacacacacacacacacacacacacacacacacacaacaatctaTCAAGCAATCAAGAAAAGGGCACTTTGCGCAAACAAACATTTAGACAGTATAagggaacacaaacacacacaaacacacaaacacacacacacagctgcaacCTGTGGCTCAGTGATGTTTCATCATTAtgcattacacacacatacaaacacacacctgttgacAGAATGATTGATCTAAATCCATTACAAACAAGCTTATAGGGAGCAGTCGATGTTACTCCCCGTGACATCTAGCCATGACAGGAGGGGAATTATTGAACTGGTATCCCCATCAGGGTTAAACTCACCTTGTGATCTTCCTTGTCATGACAGGAATGCAGCCAAACTAATACAACATAACAGACATGCCTATTATCAAGACTTCATCAACACCATATTttagcaataaggcccgaggggatGGGGTATATGGCCAGTACACCACGGCAAAgtgctgttcttaggcacaacgcaACTCAGAGTGCCTGgttacagcccttagccgtggtataatggccatataccacaaacccccgaggtgccttattgctattataaactggtcaccaacgtaattaaagcagtaaaaataaatgtattgtcatacgcatggtatacggtctgatataccacagctgtcaaccaatcagcattcaggacttgAACCACCCAGTCCTGTTAATGACTGCTGCTTTCAGCACCACGGCCAGCACCAcacagatggaaggagagagaaagagagagagggacagagggagatgtaaaaaagtgagagagaagagagcggggGAATGGATGAGGAAGAGTGGTAGAGGAAGAAAAGGAACATGGGGAAGAAtgggtgatgaagagagagagagagagaaagagatagagaactCTCATGACATGTAAATAGAGATGAGCTTGTTCTCAGGCTCCAGGCTTTCTGACACACAGACCTGTCTCAACATctcagtgtgtgcatgtgtgtgtttaaacCTCAGCCCTAAATAATTGAAATCAATGTTTCCAGCTTTTGGcttctcagacagagagaggaatgtgTGTGAAGGCTCTGATGACAATACTGCAGTTACAGAGCTCctttgatccctctctctctctactatctgTTTCATGCTCAAACCCAGAGAGGATGGAAAGTTATAACACAATAATATACAGTAACTaccttaccctaccctaccctaaccctatcctaCCCTATCCTTACCTTAtccaaccctaccctaccctatcaAACCCTATCCTTACTTTATCCAACCCTACCCCATCCTACCCTATCCGAGCCTTACCCTATCCTACCCTATCCTTACCTTATCCAACCCTatcctaccctctcctacccGTACCCTACCCTTACCTTATCCAACCCTACTCTATGCTATCCTTACCCTATCCTACCCTATCCTTACCTTATCCAACCCTACCCTATCCTACCCTATCCTTAC

Function

NR:

description
PREDICTED: probable cationic amino acid transporter

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1743080 True 4474 TUCP 0.45 1 17856141 17860614

Neighbor

gene id symbol gene type direction distance location
LOC110528768 LOC106591671 coding upstream 17124 17831450 ~ 17839017 (+)
LOC110519433 NA coding upstream 139222 17715037 ~ 17716919 (+)
LOC118936563 LOC106591654 coding upstream 141105 17705378 ~ 17715036 (+)
LOC110527382 LOC106575451 coding upstream 215351 17638633 ~ 17640790 (+)
LOC110527377 LOC100136320 coding upstream 219557 17631679 ~ 17636584 (+)
LOC110527394 LOC106591034 coding downstream 182119 18042733 ~ 18053825 (+)
LOC110528909 LOC106595470 coding downstream 197088 18057702 ~ 18075184 (+)
LOC110495693 LOC105019803 coding downstream 215586 18076200 ~ 18093990 (+)
atr atr coding downstream 236949 18097563 ~ 18129363 (+)
LOC110495694 LOC106575448 coding downstream 270492 18129571 ~ 18136939 (+)
G1522439 NA non-coding upstream 78 17855434 ~ 17856063 (+)
G1522459 NA non-coding upstream 769 17855052 ~ 17855372 (+)
G1522458 NA non-coding upstream 1545 17854316 ~ 17854596 (+)
G1522457 LOC107687231 non-coding upstream 2888 17852865 ~ 17853253 (+)
G1522452 LOC106591672 non-coding upstream 7762 17847715 ~ 17848379 (+)
G1522460 NA non-coding downstream 194 17860808 ~ 17861920 (+)
G1522468 NA non-coding downstream 8388 17869002 ~ 17869222 (+)
G1522472 NA non-coding downstream 16763 17877377 ~ 17877611 (+)
G1522473 NA non-coding downstream 19848 17880462 ~ 17880809 (+)
G1522477 NA non-coding downstream 25061 17885675 ~ 17889208 (+)
G1522437 LOC106575479 other upstream 12127 17839669 ~ 17844014 (+)
G1522415 LOC106575491 other upstream 89447 17766219 ~ 17766694 (+)
LOC110527374 LOC106592210 other upstream 228497 17623786 ~ 17631132 (+)
LOC110495674 LOC106575504 other upstream 1387718 16454118 ~ 16468453 (+)
G1520748 NA other upstream 1917323 15938230 ~ 15938818 (+)
G1522684 NA other downstream 518473 18379087 ~ 18380258 (+)
LOC110495728 LOC106574584 other downstream 733720 18594324 ~ 18595682 (+)
LOC118936474 LOC106574488 other downstream 855248 18702289 ~ 18722091 (+)
LOC110495746 LOC106574508 other downstream 1098830 18959384 ~ 18978475 (+)
G1523506 NA other downstream 1161391 19022005 ~ 19022395 (+)

Expression


Co-expression Network