G1522466 (LOC100534484)


Basic Information

Item Value
gene id G1522466
gene name LOC100534484
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17921980 ~ 17933281 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1743116
gagagggtgagttaATTGGTCTGTcgatctgtctgtttgtctgtccatctgtccgtcCGTCCAGGTATCTTACCTCTATGTAAGGGAAGGTCATGCCTATGATGAAGTTGCTGGTCCAGTTGGTGCAGCCAGCCAGAGCTATAGCAGCAGGCCTGGGGCCCTGACTGAATAACTCAGCCACAATGAACCAGGGGATGGGACCAGGGCCGATCTCaaagaaacacacaaacaggaaGATGGCCGACATACTGACATAGGACATCCAGGAGTAGACTCCAGGTACACGAGGCCGACTGTCATGGCGACGGCACAGATACACATCCCACCTAAACCAATCAGAGTCAACGTCCGTCTGCCGGCCCTGTCCACTAGAGCcacctgcagcacacacacatttttagtGTTACTGTTTGCATCACTGACCTACAAATGGTTAGTCTATGTGTGCACGTGTTAGTTTGtctgtgcgcgtgcgcgtgcgtgtgcgtgtcttTCCGTACCGACACCATGGTAAAGACGGTATTGAGAACTCCTACTCCAATGGTTGCATAGACAGGCTGAGTGACTCCTGCTCTCTCAAAGATGGCTGTGGAGTAATAAAAGATCTGAGGAGATTAAAACAAACATTATGTTTCCATTCAGTAAAGCAGAGTCATAAAAACCTCAATCTGACTTATCCAGGCTGGTAAAACAATATACAACAATATAACAGAACATAAAAACCTCAATCTGACTTATCCAGGCTGTTAAAACGATGTAAAACAATATACAACAATATAACAGAACATAAAAACCTCAATCTGACTTATCCAGGCTGGTAAAACGATGTAAAACAATATACAACAATATAACAGAACATAAAAACCTCAATCTGACTTATCCAGGCTGGTAAAACAATATAAATAAGACACAATAAACACCCTGGtgactcaaaacacacacacacacacacacacacactcagcattGATTcctgacagttgttccctctctccccctctctcagtaactcacagtgttgattcctgacagttgttccctctctctcagtaactcacagcgttgattcctgacagttgttccctctctctcagtaactcacagtggtgattccagacagttgttccctctctctcagtaactcacagtgttgattcctgacagttgttccctctctccctctctctcagtaactcacagcgttgattcctgacagttgttccctctctccctctctctcagtaactcacagtgttgattcctgacattgttccctctctctcagtaactcacagcgttgattcctgacagttgttccctctctctcagtaactcacagtggtgattccagacagttgttccctctctctcagtaactcacagtgttgattcctgacagttgttccctctctccccctctctcagtaactcacagcgttgattcctgacagttgttccctctctcagtaactcacagtgttgattcctgacagttgttccctctctctcagtaactcacagtgttgattcctgacagttgttccctctctctcagtaactcacagcgttgattcctgacagttgttccctctctccccctctctcagtaactcacagtgttgattcctgacagttgttccctcagtaactcacagcgttgattcctgACAGTTGTTGTGAGAGATGCATCATCAGGGCTACAAACAGCTGCTGCCTGTAGAGAGACGACACATACTATTTTTGGCCTCCTCCACCATGCCTCTCTTGATGTAGAGGTATCTGGGACTTTCAGGACACAGTGGCAGCAGTAGAGACTGTAAAACAGCAGGAGCTCCAGACAGACCCAGCAGCAGCGGCCAGTAGTAGTCATTACCCAGGAGGAACTCTAGACCTAGCACCTGGGGGACAGGGGGACAAAGATgagggacagacacagagagagacaggggacagagattagggacatacacagagagagacaggggGGTAGAGATTAGggactgacacagagagagacagggggacagagattagggacggacacagagagacaggaggacagagattagggacggacacagagagagacagggggacagagattaGGGACGGACACAGACAgtgacagggggacagagattaaagacagacacagagagacaggaggacagagattaaagacagacacagagagacaggaggacagagattagggacggacacagagagagacagggggacagagattaGGGACGGACACAGACAgtgacagggggacagagattagaggacagacagtgacaggggGGTAGAGATTAGggactgacacagagagagacagggggacagagattgGGGACGGACACAGACAGTACCGGGGGGATAGAGATTAGAGGACAGACAGTACCAGGGGGATAGAGGATAAAGGACAGACAGTACCAGGGGGATAGAGATTAGAGGACAGACAGTACCAGGGGGATAGAGGATaaaggacatacagtaccagggGGATAGAGATTAGAGGACAGACAGTAGTAGGGGGATAGAGATtagaggacagacagtgacaggggGATAGAGATtagaggacagacagtgacaggggGATAGAGATtagaggacagacagtgacaggggGATAGAGATtagaggacagacagtgacaggggGATAGAGATtagaggacagacagtgacaggggGATAGAGGATAAAGGACAGACAGTACCAGGGGGATAGAGATTAGAGGACAGACAGTGCCAGGGGGATAGAGATTAGAGGGCAGACAGTGCCagggggatagtgtgtgtgtgtgtgtggggggggttctTACCTGACTCAGTAGTATACCACTAACAATAGCCAGCTGATGTAAGGTTCCTAGAGATCCTCTGTAGGCCATGGGAGCTATCTCCCCTATATACATAGGAACTAACCCTGAGGACAgacctgagaaagagagagagagaaggggagagagagagagagagagagagagaaggggagagagagaaggggagcgagagagagagagagagaaggggagagagagagaaggggagagagagagagagagagatagagagagagagagagagaaggggaaggggagagagagagagagaaggagatagagagagagagagaaggggatagagagagagagagagaaggggagagagagagagaagggcagagagagagagagagagagaaggggagagagagagagagagagagagagagagagggggagagggagagagagagagagagtgagcgagagagagagagagagaaggggatagagagagagagagagagagagagagaaggggagagagagagagagaaggggagagagagagagagagacagagagagagagagagagagagagagaaggggagagagagagagagaaggggagagagagagagagagagatagagaaggggatagagagagagagagagagagagagagaaggggagagagagagagagagagagagaaagagagagagagagagagagagagaaggggccgatacccactaattatcaaaatccagaaaagagccgttaaattctacaaccacctaaaaggaaatgattcccaaaccttccataacaaagccatcaactacagagagatgaacctggagaagagtcccctaagcaagctggtcctggggctctgttcacaaacacaaacacaccccacagagccccaggacagcagcacaattagacccaaccaaatcatgagaaaacaaaaagataattacttgacacattgaaaagaattaacaaaaacagccaactagaatgctatttggccctaaacagagagcacacagtggcagaatacctgaccactgtgactgacccaaaattaaggaaagctttgactatgtacagactcagtgaacatCGCCTTGCTTTTGAGAAATGTCGCCTTAGGGAAACCTGGCTCTCAAgataagacaggctatgtgcacactgcccacaaaatgaggtggaaacctcagaatttgaaaacaaacccggtttagataaactcccatatctactgggtgaaattccacagtgttccatcacagcagcaagatttgtgacctgttgccacgagaaaagggcaaccagtgaagaacaaacaccattgtaaatacaacccatatttatgtttatttattttcctttttgtactttaactatttgcacgtaatatgacatttgaaatgtctttattattttggaatgTTTATGAGTGTGatgttactgttcatttttattgtttatttcacttttgtatattatctacctctaCTTTTGTAcctacttttgtatattatctataaAGACCTTGAATTTAAATgtaattgagggggggggggggggggggggcatcagtACCAGCTTTATTGGTGGACAGAGCTGGGCCAAATACTTCCTTCCTGATGTAGTCTAGTGTGTGACTTCATTTATTGATTACTCACCACAGTAGAATCCCATGACACATCGTCCAGCGATGACCATGACGTGAGGTTTCCACATCTTAGCCATCACCATCAGTAGACCTGCTATTACTGCTAACACATTCACCATCAACATGCCCTTCACCCTGCACAGACAGCATAGGcattagctcagtgggctaacacagtcttgtggcaTACAGACGACCCGAGTTCaaacccagtcagtcacacaAGCGCGTTCAGTTTCGTCTTGAGACAGATAGAAGAAGAGGGAGGTTCGGATGCTCACACACACCTTCCTCTCAGGTCTCCAACAAAGCCCACCAGGAAGGATGACACCACGCCCCCGATGGAGAAGATCGACACAGACAGAGACCAATACATGACCACAGAGGGATGCACTTCCTGCTTCTCTGTCCCTGTACCGTTCTCTGATAGGAGGAGAGGCTCCTCAGGGAGCACCCCCAGGGACCGCCCATAATGCTGCTCTATCACCTAGGAAACAAAGTAAAGGTTTGTAATAGTACTTGCTGTTTACTCATGACTAaaataaacagtgtgtgtgtgtaccttctgTGGCGCATTGATGACTCCCAGGCTGTATCCGTACTGTAGAGAACCCAAGACTGCTGAAAACACTGCTAGGGTTAGAGTGCCGGTCAGCTGCTGTAGGACACACAGATGTGAAAAGGTGCCTGTAATGAGCTGACCTAGTGGGCAGGGAATCAGTTCAATGCTCCATGCGGTCCCACCTGCTGTAAC
>TU1743115
GATCTGAGATTTCTACAGTACATACTATTTTTGGCCTCCTCCACCATGCCTCTCTTGATGTAGAGGTATCTGGGACTTTCAGGACACAGTGGCAGCAGTAGAGACTGTAAAACAGCAGGAGCTCCAGACAGACCCAGCAGCAGCGGCCAGTAGTAGTCATTACCCAGGAGGAACTCTAGACCTAGCACCTGGGGGACAGGGGGACAAAGATgagggacagacacagagagagacaggggacagagattagggacatacacagagagaaacaggaggacAGAGATTAaagacggacacagagagagacagggggacagagattagggacggacacagagagagacagggggacagagattagggacggacacagagagagacaggaggacagagattagggacggacacagagagagacagggggacagagatgagggacagacacagggagacaggTGGACAGAGATTAGGGACggacgcagagagagacagggggacagagatgagggacagacacagagagagacagggggacagagattagggacagacacagagagagacaggaggacaaAGATtagggacggacacagagagagacagggggacagagattaaagacagacacagagagagacaggaggacagagattagggacaaacacagagagagacaggtggacaGAGAttaaagacagacacagagagacaggaggacagagattagggacggacacagagagagacagggggacagagattaGGGACGGACACAGACAgtgacagggggacagagattagaggacagacagtgacaggggGGTAGAGATTAGggactgacacagagagagacagggggacagagattagggacggacacagagagacaggaggacagagattagggacggacacagagagagacagggggacagagattaGGGACGGACACAGACAgtgacagggggacagagattaaagacagacacagagagacaggaggacagagattaaagacagacacagagagacaggaggacagagattagggacggacacagagagagacagggggacagagattaGGGACGGACACAGACAgtgacagggggacagagattagaggacagacagtgacaggggGGTAGAGATTAGggactgacacagagagagacagggggacagagattgGGGACGGACACAGACAGTACCGGGGGGATAGAGATTAGAGGACAGACAGTACCAGGGGGATAGAGGATAAAGGACAGACAGTACCAGGGGGATAGAGATTAGAGGACAGACAGTACCAGGGGGATAGAGGATaaaggacatacagtaccagggGGATAGAGATTAGAGGACAGACAGTAGTAGGGGGATAGAGATtagaggacagacagtgacaggggGATAGAGATtagaggacagacagtgacaggggGATAGAGATtagaggacagacagtgacaggggGATAGAGATtagaggacagacagtgacaggggGATAGAGATtagaggacagacagtgacaggggGATAGAGGATAAAGGACAGACAGTACCAGGGGGATAGAGATTAGAGGACAGACAGTGCCAGGGGGATAGAGATTAGAGGGCAGACAGTGCCagggggatagtgtgtgtgtgtgtgtggggggggttctTACCTGACTCAGTAGTATACCACTAACAATAGCCAGCTGATGTAAGGTTCCTAGAGATCCTCTGTAGGCCATGGGAGCTATCTCCCCTATATACATAGGAACTAACCCTGAGGACAgacctgagaaagagagagagagaaggggagagagagagagagagagagagagaaggggagagagagaaggggagcgagagagagagagagagaaggggagagagagagaaggggagagagagagagagagagatagagagagagagagagagaaggggaaggggagagagagagagagaaggagatagagagagagagagaaggggatagagagagagagagagaaggggagagagagagagaagggcagagagagagagagagagagaaggggagagagagagagagagagagagagagagagggggagagggagagagagagagagagggagagagagagagagagacagagagagagagagagagagagagagaaggggagagagagagagagaaggggagagagagagagagagagatagagaaggggatagagagagagagagagagagagagagaaggggagagagagagagagagagagagaagtggagagagagagagagagagaaggggagatagagagagagagagagagagagagagagagaaggggccgatacccactaattatcaaaatccagaaaagagccgttaaattctacaaccacctaaaaggaaatgattcccaaaccttccataacaaagccatcaactacagagagatgaacctggagaagagtcccctaagcaagctggtcctggggctctgttcacaaacacaaacacaccccacagagccccaggacagcagcacaattagacccaaccaaatcatgagaaaacaaaaagataattacttgacacattgaaaagaattaacaaaaacagccaactagaatgctatttggccctaaacagagagcacacagtggcagaatacctgaccactgtgactgacccaaaattaaggaaagctttgactatgtacagactcagtgaacatCGCCTTGCTTTTGAGAAATGTCGCCTTAGGGAAACCTGGCTCTCAAgataagacaggctatgtgcacactgcccacaaaatgaggtggaaacctcagaatttgaaaacaaacccggtttagataaactcccatatctactgggtgaaattccacagtgttccatcacagcagcaagatttgtgacctgttgccacgagaaaagggcaaccagtgaagaacaaacaccattgtaaatacaacccatatttatgtttatttattttcctttttgtactttaactatttgcacgtaatatgacatttgaaatgtctttattattttggaatgTTTATGAGTGTGatgttactgttcatttttattgtttatttcacttttgtatattatctacctctaCTTTTGTAcctacttttgtatattatctataaAGACCTTGAATTTAAATgtaattgagggggggggggggggggggggcatcagtACCAGCTTTATTGGTGGACAGAGCTGGGCCAAATACTTCCTTCCTGATGTAGTCTAGTGTGTGACTTCATTTATTGATTACTCACCACAGTAGAATCCCATGACACATCGTCCAGCGATGACCATGACGTGAGGTTTCCACATCTTAGCCATCACCATCAGTAGACCTGCTATTACTGCTAACACATTCACCATCAACATGCCCTTCACCCTGCACAGACAGCATAGGcattagctcagtgggctaacacagtcttgtggcaTACAGACGACCCGAGTTCaaacccagtcagtcacacaAGCGCGTTCAGTTTCGTCTTGAGACAGATAGAAGAAGAGGGAGGTTCGGATGCTCACACACACCTTCCTCTCAGGTCTCCAACAAAGCCCACCAGGAAGGATGACACCACGCCCCCGATGGAGAAGATCGACACAGACAGAGACCAATACATGACCACAGAGGGATGCACTTCCTGCTTCTCTGTCCCTGTACCGTTCTCTGATAGGAGGAGAGGCTCCTCAGGGAGCACCCCCAGGGACCGCCCATAATGCTGCTCTATCACCTAGGAAACAAAGTAAAGGTTTGTAATAGTACTTGCTGTTTACTCATGACTAaaataaacagtgtgtgtgtgtaccttctgTGGCGCATTGATGACTCCCAGGCTGTATCCGTACTGTAGAGAACCCAAGACTGCTGAAAACACTGCTAGGGTTAGAGTGCCGGTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1743116 False 5244 lncRNA 0.48 7 17921980 17933281
TU1743115 True 3938 lncRNA 0.49 3 17929055 17933181

Neighbor

gene id symbol gene type direction distance location
LOC110528768 LOC106591671 coding upstream 82963 17831450 ~ 17839017 (+)
LOC110519433 NA coding upstream 205061 17715037 ~ 17716919 (+)
LOC118936563 LOC106591654 coding upstream 206944 17705378 ~ 17715036 (+)
LOC110527382 LOC106575451 coding upstream 281190 17638633 ~ 17640790 (+)
LOC110527377 LOC100136320 coding upstream 285396 17631679 ~ 17636584 (+)
LOC110527394 LOC106591034 coding downstream 109452 18042733 ~ 18053825 (+)
LOC110528909 LOC106595470 coding downstream 124421 18057702 ~ 18075184 (+)
LOC110495693 LOC105019803 coding downstream 142919 18076200 ~ 18093990 (+)
atr atr coding downstream 164282 18097563 ~ 18129363 (+)
LOC110495694 LOC106575448 coding downstream 197825 18129571 ~ 18136939 (+)
G1522498 LOC106575464 non-coding upstream 887 17920084 ~ 17921093 (+)
G1522477 NA non-coding upstream 32772 17885675 ~ 17889208 (+)
G1522473 NA non-coding upstream 41171 17880462 ~ 17880809 (+)
G1522472 NA non-coding upstream 44369 17877377 ~ 17877611 (+)
G1522468 NA non-coding upstream 52758 17869002 ~ 17869222 (+)
G1522487 NA non-coding downstream 5197 17938478 ~ 17940711 (+)
G1522544 NA non-coding downstream 88777 18022058 ~ 18022281 (+)
G1522600 NA non-coding downstream 283359 18216640 ~ 18217776 (+)
G1522563 NA non-coding downstream 291501 18224782 ~ 18231387 (+)
G1522438 NA other upstream 61366 17856141 ~ 17860614 (+)
G1522437 LOC106575479 other upstream 77966 17839669 ~ 17844014 (+)
G1522415 LOC106575491 other upstream 155286 17766219 ~ 17766694 (+)
LOC110527374 LOC106592210 other upstream 294336 17623786 ~ 17631132 (+)
LOC110495674 LOC106575504 other upstream 1453557 16454118 ~ 16468453 (+)
G1522684 NA other downstream 445806 18379087 ~ 18380258 (+)
LOC110495728 LOC106574584 other downstream 661053 18594324 ~ 18595682 (+)
LOC118936474 LOC106574488 other downstream 782581 18702289 ~ 18722091 (+)
LOC110495746 LOC106574508 other downstream 1026163 18959384 ~ 18978475 (+)
G1523506 NA other downstream 1088724 19022005 ~ 19022395 (+)

Expression


Co-expression Network