G1523063 (atr)


Basic Information

Item Value
gene id G1523063
gene name atr
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18113471 ~ 18114182 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1743861
tgtgtgtgtctgcagtgtgtgtgtgtctgcagtgtgtgtgtgtctgcagtgtgtgtgtctgcagtgtgtgtgtgtttgcagtgtgtgtgtgtttgcagtgtgtgtgtctgcagtgtgtgtgtgttagcagtgtgtgtgtgttagcagtgtgtgtgtgttagcagtgtgtgtgtgttagcagtgtgtgtgtgtgtaccggctTGTTGCAGAGCTCCAGTAGTTTGTCAGTCAGTCTGTTGGCATCTCCTATGAACTTCCCCAGACTCTCCTTCAGACTGACAGCCTTCCTCAGGATCTCCTTACAGCGGTTCATACGGGTAGGGTAGGACGACTTGGACACTGCGGTCATCAACCACATGGCCTGCTGAGGGTAGGCCAGCAGCACCTTGGCAGCGATGTCCATGAGGACGTTGAAGACATCCTCACTGCTGTGACACACCCTGGAGATGAGCTGGGAGAAGGCAGTGAGGAACTGGTATGGAGCCAGCCTGGTGCAGTGGTCGCTGACCACCTGGTTGATCTTCCCCAGCTCCACGCGTATCTGCCGCTCTGTT

Function

symbol description
atr Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within several processes, including determination of left/right symmetry; intrinsic apoptotic signaling pathway in response to DNA damage; and regulation of heart looping. Predicted to be active in nucleus. Is expressed in hindbrain neural rod; midbrain neural rod; optic vesicle; somite; and tail bud. Human ortholog(s) of this gene implicated in Seckel syndrome 1 and pancreatic cancer. Orthologous to human ATR (ATR serine/threonine kinase).

NR:

description
serine/threonine-protein kinase ATR

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1743861 True 554 lncRNA 0.54 2 18113471 18114182

Neighbor

gene id symbol gene type direction distance location
LOC118941107 NA coding downstream 59117 18051980 ~ 18054354 (-)
trnal-cag-26 NA coding downstream 71972 18041417 ~ 18041499 (-)
trnal-cag-25 NA coding downstream 72818 18040571 ~ 18040653 (-)
trnal-cag-24 NA coding downstream 73586 18039803 ~ 18039885 (-)
trnal-cag-23 NA coding downstream 74158 18039231 ~ 18039313 (-)
LOC110495700 LOC106594337 coding upstream 46773 18160955 ~ 18167363 (-)
LOC110495699 LOC106574468 coding upstream 110600 18224782 ~ 18231424 (-)
LOC110497068 LOC106574469 coding upstream 117707 18231889 ~ 18237893 (-)
ghs-r ghsr coding upstream 330901 18445083 ~ 18447303 (-)
LOC110497072 LOC106574477 coding upstream 385644 18499826 ~ 18513863 (-)
G1523056 NA non-coding downstream 8459 18104619 ~ 18105012 (-)
G1523045 NA non-coding downstream 25717 18084524 ~ 18087754 (-)
trnal-cag-10 NA non-coding downstream 90775 18022401 ~ 18022696 (-)
G1522995 NA non-coding downstream 226716 17882977 ~ 17886755 (-)
G1522993 NA non-coding downstream 233030 17880017 ~ 17880441 (-)
G1523081 NA non-coding upstream 49032 18163214 ~ 18163965 (-)
G1523073 LOC106575446 non-coding upstream 87069 18201251 ~ 18202588 (-)
G1523114 NA non-coding upstream 124336 18238518 ~ 18238736 (-)
G1523115 NA non-coding upstream 124968 18239150 ~ 18239685 (-)
G1523116 NA non-coding upstream 125739 18239921 ~ 18240135 (-)
LOC110510546 LOC106575482 other downstream 368573 17719504 ~ 17815003 (-)
LOC118941106 LOC106575483 other downstream 410718 17685551 ~ 17702827 (-)
LOC110528763 LOC106575486 other downstream 443512 17640874 ~ 17671930 (-)
G1522794 NA other downstream 663293 17441659 ~ 17450178 (-)
G1523149 fndc3b other upstream 317911 18432093 ~ 18436052 (-)
G1523234 NA other upstream 426963 18541145 ~ 18541711 (-)
G1523241 NA other upstream 447724 18561906 ~ 18567247 (-)
G1524311 NA other upstream 634943 18749125 ~ 18749395 (-)

Expression


Co-expression Network