G1522563


Basic Information

Item Value
gene id G1522563
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18224782 ~ 18231387 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1743259
TttacaatttcaatgattttatttAACCAGTCTATGGATTCACGGCAGGTGTGTTAATTTAACCAGACAGAAAAATGCTGATTCTTCCTAACAAGTCCCACAGGGTTAGGGACAGATAAGTGGATCTaatccagggctctccaaccctgttcctggagagataccttcctgtaggtttgacctgattcagcttatcaaccaacAAATTGTTAGAATCAagtgcgctagattagggttggagtgaaaacctacaggagggtatctctccaggaacagggttggagtgaaaacctacaggagggtatctctccaggaacagggttggagtgaaaacctacaggaaggtatctctccaggaacagggttggagagccctgctctaaGCTACTGGTGAAATTGGAGACCGACAGGTCGGGTGGTTGAAGGTGTCTGTTAGAGTGGGATGTTGGCGTGTTTCTTCCAGGGGTTGGTCTGTTTCTTGGAGGCCAGAACCTCCAGATCCCTACAGATCCTCTTCCGGGTGGTCGACGGCACGATGATGTCATCCACGAACCctctgacAGCGGCAGGGAAAGGGTTGGCGAACTTCTCTACGTATTCAGCCTCCTGCTCTGCCTGGTTGGATTTCCCTCTGAAGATGATCTGTACAGCACCcttGGCTCCCATCACGGCCACCTCTGCAGACGGCCAGGCGTAGTTCACATCTCCTCTCAGGTGCTTGGAACTCATGACGTCATACGCTCCTCCGTAGGCCTTCCTAGTGATGATGGTGATCTTGGGGACGGTGGCCTCAGCAAAGGCAAACAGTAGCTTGGCCCCGTGTCGGATGATACCGCCATACTCCTGAGACGTACCTGGCAGGAAACCAGGCACGTCCACGAAGGTGAGGATGGGGATGTTGAAAGCGTCACAGAAACGAACGAAGCGAGCTCCCTTCACTGATGAGTTAATGTCCAGAcaacCAGATGCTACTTTAGGTTGATTCCCTACAATTCCAACAGTTCGTCCGTTCATGCGAGCGAATCCCACTACGATGTTTTTAGCGTAGTTAGGCATGATCTCAAAGAACTCCCTCTCGTCCGTAATCCCCTGGATGATGTCCAGCATGTCGTAGGCTTTAGTGGTCTCAAAGGGAACAATGGTGTCCAGACCAGGAACCAGTCTATCaCTGGGGTCGTGGCACTCAGTAACGGGGGCGGGGTCCTGGTTGCTAAGGGGAAGGAAGTTGAAGAAGTTTCGGAGGTTGAGCAGAGCATCGATGTCGTTCTCAAACGCACGGTGAGCGACGCCTGACACGGCGGTGTGTGTTTTAGCTCCTCCCAGTTCCTCCTGAGTGACGTCTTCATTGGTGACAGACTTCACTACGTCAGGACCTGTGATGAACAGGTATGAGgtgtcCTTGACCATAAAGGTGAAGTCGGTCAGGGCAGGAGAGTAGACAGCTCCTCCAGCACAGGGACCCATGATCAGAGAGATCTGAGGAACCACACCTGAAGCCATCACATTCCTCAGGAAGATGTCAGCGTATCCAGCCAGTGACTCCACCCCCTCCTGGATCCTGGCTCCGCCAGAGTCGTTTAGACCAATGACTGGAGCACCCACCATCATGGCCTGGTCCATGATCTTACAGATCTTCTGTGCGTGAGCCCCAGACAGACTGCCTCCAAATACTGTGAAGTCctgactgAAGACATACACCAGCCTTCCGTTGATCCTCCCCTGTCCAGTCACCACACTGTCCCCTGCGaaCTTGTTGTGGTCCTCTTCCATGCCGAAGTCAGAGCAGCGATGTTCCACAAACATGTCACACTCTACAAACGAGTCTTTATCCAACAGGAGCTcaactctctctctggctgtcagCTTCCCCCTTTTGTGTTGCGCGTCAATTCTCTTCTGACCTCCTCCGATCAGCGCAGCattcctctttctgtctatccTCTCCTGAACGGAGAGATGACTAACGGAATACCACCGCCGCGACTGTTGCTGCAGCTCGGACTGTGCAACGGCTGCCGAAGCCGCGCCATGTTTTACCTGTCCGAATGTTTTAAAAGAAGCTTTTAGTCCGGAAAGCAGAACGCAGCGGCTCCGTGCTACAGCGAAGGCCGC

Function

NR:

description
propionyl-CoA carboxylase beta chain, mitochondrial-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1743259 True 2112 lncRNA 0.52 13 18224782 18231387

Neighbor

gene id symbol gene type direction distance location
LOC110517300 LOC106575446 coding upstream 642 18176721 ~ 18224140 (+)
LOC110495710 LOC106574671 coding upstream 66281 18156850 ~ 18158501 (+)
LOC110495707 LOC106574672 coding upstream 79301 18143136 ~ 18145481 (+)
LOC110495694 LOC106575448 coding upstream 87843 18129571 ~ 18136939 (+)
atr atr coding upstream 95419 18097563 ~ 18129363 (+)
LOC110497069 ppp2r3a coding downstream 20351 18251738 ~ 18305237 (+)
LOC110495706 LOC105019796 coding downstream 78594 18309981 ~ 18432516 (+)
LOC110497071 LOC106574566 coding downstream 217047 18448434 ~ 18480492 (+)
tspan37 LOC106574474 coding downstream 249390 18480777 ~ 18484626 (+)
elavl1a LOC106574475 coding downstream 257335 18488722 ~ 18498859 (+)
G1522600 NA non-coding upstream 7006 18216640 ~ 18217776 (+)
G1522544 NA non-coding upstream 202501 18022058 ~ 18022281 (+)
G1522487 NA non-coding upstream 284071 17938478 ~ 17940711 (+)
G1522466 LOC100534484 non-coding upstream 291501 17921980 ~ 17933281 (+)
G1522601 LOC106575419 non-coding downstream 503 18231890 ~ 18236181 (+)
G1522604 NA non-coding downstream 8522 18239909 ~ 18241184 (+)
G1522605 NA non-coding downstream 9877 18241264 ~ 18242350 (+)
G1522606 NA non-coding downstream 12908 18244295 ~ 18244526 (+)
G1522639 NA non-coding downstream 27543 18258930 ~ 18259151 (+)
G1522438 NA other upstream 364168 17856141 ~ 17860614 (+)
G1522437 LOC106575479 other upstream 380768 17839669 ~ 17844014 (+)
G1522415 LOC106575491 other upstream 458088 17766219 ~ 17766694 (+)
LOC110527374 LOC106592210 other upstream 597138 17623786 ~ 17631132 (+)
LOC110495674 LOC106575504 other upstream 1756359 16454118 ~ 16468453 (+)
G1522684 NA other downstream 147700 18379087 ~ 18380258 (+)
LOC110495728 LOC106574584 other downstream 362947 18594324 ~ 18595682 (+)
LOC118936474 LOC106574488 other downstream 484475 18702289 ~ 18722091 (+)
LOC110495746 LOC106574508 other downstream 728057 18959384 ~ 18978475 (+)
G1523506 NA other downstream 790618 19022005 ~ 19022395 (+)

Expression


Co-expression Network