G1522601 (LOC106575419)


Basic Information

Item Value
gene id G1522601
gene name LOC106575419
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18231890 ~ 18236181 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1743312
CAAACTGATCAATATTTATTGGAGGGTTAAACATCTCTCAACCATTACAATTATAATTGTACATAAAGTACTGACACCCAGCAGCAGTTACTGGGGACACCTGAGATCATTCTGTTCAGTGGAAAACAATCAAGCTCTCACAGCGTTGGGGGTTGAAAAGTCCTCACCCAATACCCTGTCTAAAGAACATACTTCATTTTCaagttttgttattgtttttacagCACCAGGGGATCGTGTTGTATGACCTTTTAAGTCCTCATTGTTTTTCCATCTAGTCACAATTCTATATAGATTGCATTGATGTGTAACCCAGTTGTGCACATAGCATAATTTAACCCAATCTATTCTAGAAATAGGACTCTTATGGAGTCAGCAGATTACCCAGATTACTACATTCTAACACTGCGCATTGATTGGCTTAGATGGAAGTTTATTTTAGTGTATTAGTTTGACAGACAGATAACATACTGCATATGTATTGTTCAGGTCAGTTGAGCAGAGCTGGGATAGGATGACGTGTGTGTGGGTTTAACGGAACCAAACGTATTGTGACACACACACCCCAGAGTGCAAACAGCTAAAATCAGGGAATGGTGTCTGTGTTATATTCTTACATTCTAACACAGTTTAAAACACCAGTCCAACCCAGTTTGATCCAGTTTAACCCAGTAAGAGAGACATTCTAACCGAGGTCAACAATCAGGTTGAACCCAGTTTAAAAGCCTTAAAAACATCTGCTTGTCTAACCTGGACATTGGTCTGAAATTCTGACTGCAAGATGGCTTTGGGTTTGCAgctgcatagacacacacacacacacacactagaggttTTCCTGCAGCCAGTCCATGTATCCTCTGATCATTCTTTCCCCCACATCGAAGAAAAACGGCCAGTGAGCAAAACTCAAGGCGCCGTGGAAACCGTCGTCATAGTGATGGCTGGAAACCGCGACGCCAGCGTCTTGTAGCCTCCTGGTGTACATCAACCCATCGTCTCTGAGCACATCGTACTCACACGTTAGAATGTAAGCTCGCGGCGTTCTACTCAGAACCCCCTGTTCCGCCAGCAGCGGCGCCGCTCGGACATCCAGCAACCCCGGGAGAAGATCACCCTCCTGCCCTGTGACCTCCTGTGACCCCATCTCCATGCCAACAGGCTTGTAATGCTTAATGTGTTTGGCCGGCAGAAGGGTGGTCCAGTTGAGATGGGAgcggacggagggagggatggagggatgatggaggaaggagggggacaagaggaggggatggagagaggtatcAACCCCCAGGTAGAGCAGCCAGAACctgccatCATAGAGCGGTGTAGCATGGGCATGTTGTGGTTCTGTTGGTAGGATGGAGTGTTGAGGTCTAGACCCTGGAGGACTGGGTAGATTAACGCCTGAACACTGAACTTCACACGCACACTGTCATCTACCGAGATCTGTGAAGACAGGgagagtgtgttagtgtgtctgtgtagacacgtgtgtgtgtgtgtgtgtgtgtgtgtacctgctgtgcGACCGCTgcagccaggtttcctccagcgcTGTCGCCTGACACGGCCACGCGCTGTGGATCCACAGACAACTTTCCCAGAATGCCCGGCTCCAAGAAGTGCTTGGCCGCAGCCAGACAGTCCTCATACTGCACAGGGAAATGCACTTCTGGAGCCAGAcggtacctacacacacacacacacacacCTCAACAGACACAACCACTGCATTCAGCTCATCAGACATCTGCCTACACAAGACATCATAGCTCCCCATCTCTGAGAGGAAGACagatggagggggaagagagaggtgggagagtagagaaggagagagagatggaggagtagaggagagaaaaagagatgggggagtagagaaggagagagatgaggggagtagaggagagaaagagagatgggggagtagagaaggaaagagatgaggggagtagaggagagaaagagagatgaggggagtagagaaagagagagatgggggagtagagaaggagagaaagagagagatgggggagtagagaaggagagagatgggggagtagagaaggagagaaggagagaga
>TU1743314
CAAACTGATCAATATTTATTGGAGGGTTAAACATCTCTCAACCATTACAATTATAATTGTACATAAAGTACTGACACCCAGCAGCAGTTACTGGGGACACCTGAGATCATTCTGTTCAGTGGAAAACAATCAAGCTCTCACAGCGTTGGGGGTTGAAAAGTCCTCACCCAATACCCTGTCTAAAGAACATACTTCATTTTCaagttttgttattgtttttacagCACCAGGGGATCGTGTTGTATGACCTTTTAAGTCCTCATTGTTTTTCCATCTAGTCACAATTCTATATAGATTGCATTGATGTGTAACCCAGTTGTGCACATAGCATAATTTAACCCAATCTATTCTAGAAATAGGACTCTTATGGAGTCAGCAGATTACCCAGATTACTACATTCTAACACTGCGCATTGATTGGCTTAGATGGAAGTTTATTTTAGTGTATTAGTTTGACAGACAGATAACATACTGCATATGTATTGTTCAGGTCAGTTGAGCAGAGCTGGGATAGGATGACGTGTGTGTGGGTTTAACGGAACCAAACGTATTGTGACACACACACCCCAGAGTGCAAACAGCTAAAATCAGGGAATGGTGTCTGTGTTATATTCTTACATTCTAACACAGTTTAAAACACCAGTCCAACCCAGTTTGATCCAGTTTAACCCAGTAAGAGAGACATTCTAACCGAGGTCAACAATCAGGTTGAACCCAGTTTAAAAGCCTTAAAAACATCTGCTTGTCTAACCTGGACATTGGTCTGAAATTCTGACTGCAAGATGGCTTTGGGTTTGCAgctgcatagacacacacacacacacacacacacactagaAATGATCTTGTTGTAAGAAGGTGCGTGACtggctgcagggaagtcaggcgcaggagagcagaactgggtaataaccggagcagtttaatatgcaAAAACCAACGGCACTCAGAACAACAAAATATGGGTACAAA
>TU1743315
gtacctggccatCATAGAGCGGTGTAGCATGGGCATGTTGTGGTTCTGTTGGTAGGATGGAGTGTTGAGGTCTAGACCCTGGAGGACTGGGTAGATTAACGCCTGAACACTGAACTTCACACGCACACTGTCATCTACCGAGATCTGTGAAGACAGGgagagtgtgttagtgtgtctgtgtagacacgtgtgtgtgtgtgtgtgtgtgtgtgtacctgctgtgcGACCGCTgcagccaggtttcctccagcgcTGTCGCCTGACACGGCCACGCGCTGTGGATCCACAGACAACTTTCCCAGAATGCCCGGCTCCAAGAAGTGCTTGGCCGCAGCCAGACAGTCCTCATACTGCACAGGGAAATGCACTTCTGGAGCCAGAcggtacctacacacacacacacacacacCTCAACAGACACAACCACTGCATTCAGCTCATCAGACATCTGCCTACACAAGACATCATAGCTCCCCATCTCTGAGAGGAAGACagatggagggggaagagagaggtgggagagtagagaaggagagagagatggaggagtagaggagagaaaaagagatgggggagtagagaaggagagagatgaggggagtagaggagagaaagagagatgggggagtagagaaggaaagagatgaggggagtagaggagagaaagagagatgaggggagtagagaaagagagagatgggggagtagagaaggagagaaagagagagatgggggagtagagaaggagagaaggagagagatggaggagtagagaaggagagaaagagagagatgggggagtagagaaggagagagatgggggagtagagaaggagagaaagagagagatgggggagtagagaaggagagagatgggggagtagagaaggagagaaggagagaga

Function

NR:

description
neutral cholesterol ester hydrolase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1743312 False 2093 lncRNA 0.49 5 18231890 18234662
TU1743314 False 971 lncRNA 0.41 2 18231890 18236181
TU1743315 True 905 lncRNA 0.53 4 18233308 18234662

Neighbor

gene id symbol gene type direction distance location
LOC110517300 LOC106575446 coding upstream 7750 18176721 ~ 18224140 (+)
LOC110495710 LOC106574671 coding upstream 73389 18156850 ~ 18158501 (+)
LOC110495707 LOC106574672 coding upstream 86409 18143136 ~ 18145481 (+)
LOC110495694 LOC106575448 coding upstream 94951 18129571 ~ 18136939 (+)
atr atr coding upstream 102527 18097563 ~ 18129363 (+)
LOC110497069 ppp2r3a coding downstream 15557 18251738 ~ 18305237 (+)
LOC110495706 LOC105019796 coding downstream 73800 18309981 ~ 18432516 (+)
LOC110497071 LOC106574566 coding downstream 212253 18448434 ~ 18480492 (+)
tspan37 LOC106574474 coding downstream 244596 18480777 ~ 18484626 (+)
elavl1a LOC106574475 coding downstream 252541 18488722 ~ 18498859 (+)
G1522563 NA non-coding upstream 503 18224782 ~ 18231387 (+)
G1522600 NA non-coding upstream 14114 18216640 ~ 18217776 (+)
G1522544 NA non-coding upstream 209609 18022058 ~ 18022281 (+)
G1522487 NA non-coding upstream 291179 17938478 ~ 17940711 (+)
G1522604 NA non-coding downstream 3728 18239909 ~ 18241184 (+)
G1522605 NA non-coding downstream 5083 18241264 ~ 18242350 (+)
G1522606 NA non-coding downstream 8114 18244295 ~ 18244526 (+)
G1522639 NA non-coding downstream 22749 18258930 ~ 18259151 (+)
G1522640 NA non-coding downstream 25031 18261212 ~ 18261496 (+)
G1522438 NA other upstream 371276 17856141 ~ 17860614 (+)
G1522437 LOC106575479 other upstream 387876 17839669 ~ 17844014 (+)
G1522415 LOC106575491 other upstream 465196 17766219 ~ 17766694 (+)
LOC110527374 LOC106592210 other upstream 604246 17623786 ~ 17631132 (+)
LOC110495674 LOC106575504 other upstream 1763467 16454118 ~ 16468453 (+)
G1522684 NA other downstream 142906 18379087 ~ 18380258 (+)
LOC110495728 LOC106574584 other downstream 358153 18594324 ~ 18595682 (+)
LOC118936474 LOC106574488 other downstream 479681 18702289 ~ 18722091 (+)
LOC110495746 LOC106574508 other downstream 723263 18959384 ~ 18978475 (+)
G1523506 NA other downstream 785824 19022005 ~ 19022395 (+)

Expression


Co-expression Network