G1523102


Basic Information

Item Value
gene id G1523102
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18253215 ~ 18258328 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1743918
CTCAGAGCTGCCCTGACTTGAACTGAAGGGTGTGTGTCCACGTTCCCTTGTTCTCCCACCaattacatcacacacacaccctcacacaatGTTAGACCTGCTCAATCTATGAATCacgcatgagtgtgtgtgtttgtgtctcagcAATATGGAAACAGTCTGGCTGTCCTCCTTCACCTACGGCTGTAATGGACACCCTTCAactcaaacagacacacacagacacacacatagacacacacagacacacacagacacacacacagacacacacagacacacacatagacacacacagacacacacagacacacacatagacacacacagacacacacagacacacacatagacacacatagacacacacatagacacacacagacacacacagacacacacatagacacacacaaacacacatagacacacacagacacatacagacacacatagacacacatagacacacacagacacacagacacacacagacacacacagacacacacatagacacacacagacacacatagacacacacagacacacacagacacacacagacacacatagacacacacatagacacacacagacacacacatacacacacatacacacacatagacacacacagacacacacagacacacacagacacacacagacacacacatagacacacacagacacacatagacacacacagacacacatagacacacacagacacacatagacacacacagacacacatagacacacacagacacacacagacacacacatagacacacacagacacacacagacacacacagacacacacagacacacacatagacacacacagacacacatagacacacacataaacacacacagacacacatagacacacacagacacacacagacacacacagacacacacatagacacacacagacacacatagacacacacagacacacacagacacacacagacacacatagacacacacagacacacagacacacacagacacacacagacacacacatagacacacacagacacacatagacacacacagacacacatatacacacacagacacacatagacacacatagacacacacagacacacacagacacacacatagacacacacagacacacatagacacacacagacacacacagacacacacatagacacacacagacacacatagacacacacatatagacacacacatagacacattgacacacacagacacacacagacacacacatagacacacacaaacacacataggcacacacagacacacacagacacacacagacacacatagacacacatagacacacacagacacacatagacacacacagacacacacagacacacacatagacacacacagacacacatagacacacacagacacacacagacacacacagacacacacagacacacacatagacacacatagacacacacagacacacacagacacacacagacacacatagacacacacagacacacatagacacacacagacacacacagacacacacatagacacacacagacacacatagacacacacagacacacacagacacacacagacacacacatagacacacacagacacacatagacacacacataaacacacacagacacacatagacacacacagacacacatagacacacacagacacacacagacacacacagacacacacagacacacatagacacacacatagacacacacagacacacatagacacacacataaacacacacagacacacacatagacacacacagacacacatagacacacacagacacacacagacacacacagacacacacagacacacatagacacacacagacacacatagacacacacagacacacacagacacacacagacacacacagacacacacatagacacacacagacacacatagacacacatagacacacacagacacacatagacacacacagacacacatagacacacatagacacacacagacacacacagacacacacatagacacacacagacacacacagacacacacagacacacacagacacacacagacacacacatagacacacacagacacacacatagacacacacagacacacatagacacacacatagacacacacagacacacatagacacacacatagacacacacatagacacatagacacacacagacacacacagacacacacatagacacacacagacacacatagacacacacagacacacacagacacacatagacacacatagacacacacagacacacacagacacacacatagacacacacagacacacatagacacacacagtcacacatagacacacacagacacacatagacacacagagacacacatagacacacacagacacacatagacacacatagacacacacagacacacacagacacacatagacacacacagacacacatagacacacacagacacacacagacacacacatagacacacacagacacacatagacacacacagacacacacagacacacacagacacacacataaacacacacagacacacatagacacactcagacacacacagacacacacatagacacacacagacacacatagacacacacagacacacatagacacacacagacacacatagacacacacagacacacatagacacacacagacacacacataaacacacacagacacacatagacacacacagacacacacagacacacacagacacacacagacacacatagacacacatagacacacacagacacacacagacacacacatagacacacacagacacacatagacacacacatagacacacacatagacacacacagacacacacagacacacacatagacacacacatagacacacacagacacacatagacacacacatagacacacacagacacacacagacacacatagacacacacagacacacacatagacacacacagacacacatagacacacacagacacacacagacacacacagacacacatagacacacacatagacacacacacagacacacacagacacacatagacacacacagacacacacagacacacacagacacacacatagacacacacatagacacacacatacacacatagacacacacatagacacacacatagacacacacagacacacatagacacacacatagacacacacatagacacacagacacacacagacacacatagacacacacacacatagacacacacaaagacacacacagacacacatagacacacatagacacacacagacacacatagacacacacacacatagacacacacaaagacacacacagacacacatagacacacacagacacacacagatacacacagacacacatagacacacatagacacacacaaagacacacacagacacacatagacacacatagacacacacagacacacacatagacacacacagacacacatagacacacatagacacacatagacacacatagatacacacagacacacatagacacacatagacacacacagacacacacagacacacacagacacacatagacacacacaggcacacatagacacacacagacacacagacacacatagacacacacagacacacacacagacacacatagacacacatagacacacacagacacacacatagacacacacagacacacatagataCACATAGATACACATAGATACACAtagatacacatagacacacatagatACACATAGATACACACTGCCCACAGCAACAACTATCTGTGAGAAGACGCACGTATATAAAGGACTGTGAGAAACCTGGATCCTAACAAGTACAtttccaaaacacacacactctctcaccaaCAGAACACACTCTCTAATACACCACAAGGCCAGAGTGGGATAAGGGTGGACAATATAGTGTGAATGTTACATCACATCATAAATCTTATAGTACTGGTATATAACAGGATTTTTATTTCAGATTATCTGAATAGCCATTCCCCCAGAGCAATACATCCCCAGTCTCCTCCACTGCCTCTGTGGTctgcctgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgagttgcACATACACCACAGCCCTGCCAGAGTGGTCTCTGTGGCTGTCCAAGCGTCAGTCTGTCCAGCCAGGGTCGGGTTACGGCTTTACCAGATCtctgcttcacacacacacatacgcgagaacgcatgcaaacacacacacacacacaaacaccccaaAGCCACGTCCATTCACCGAACTATACAGCAAAATCTAGATagcacaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1743918 True 4520 lncRNA 0.45 4 18253215 18258328

Neighbor

gene id symbol gene type direction distance location
LOC110497068 LOC106574469 coding downstream 15322 18231889 ~ 18237893 (-)
LOC110495699 LOC106574468 coding downstream 21791 18224782 ~ 18231424 (-)
LOC110495700 LOC106594337 coding downstream 85852 18160955 ~ 18167363 (-)
LOC118941107 NA coding downstream 198861 18051980 ~ 18054354 (-)
trnal-cag-26 NA coding downstream 211716 18041417 ~ 18041499 (-)
ghs-r ghsr coding upstream 186755 18445083 ~ 18447303 (-)
LOC110497072 LOC106574477 coding upstream 241498 18499826 ~ 18513863 (-)
LOC118941108 LOC106575244 coding upstream 337456 18595784 ~ 18603170 (-)
LOC110495729 LOC106574585 coding upstream 346269 18604597 ~ 18617046 (-)
LOC110497079 LOC106575437 coding upstream 370763 18629091 ~ 18643487 (-)
G1523122 NA non-coding downstream 184 18252697 ~ 18253031 (-)
G1523116 NA non-coding downstream 13080 18239921 ~ 18240135 (-)
G1523115 NA non-coding downstream 13530 18239150 ~ 18239685 (-)
G1523114 NA non-coding downstream 14479 18238518 ~ 18238736 (-)
G1523073 LOC106575446 non-coding downstream 50627 18201251 ~ 18202588 (-)
G1523137 NA non-coding upstream 38151 18296479 ~ 18297982 (-)
G1523143 NA non-coding upstream 44174 18302502 ~ 18302840 (-)
G1523160 NA non-coding upstream 59715 18318043 ~ 18318537 (-)
G1523289 NA non-coding upstream 230372 18488700 ~ 18489891 (-)
G1523230 NA non-coding upstream 294436 18552764 ~ 18554450 (-)
LOC110510546 LOC106575482 other downstream 508317 17719504 ~ 17815003 (-)
LOC118941106 LOC106575483 other downstream 550462 17685551 ~ 17702827 (-)
LOC110528763 LOC106575486 other downstream 583256 17640874 ~ 17671930 (-)
G1522794 NA other downstream 803037 17441659 ~ 17450178 (-)
G1523149 fndc3b other upstream 173765 18432093 ~ 18436052 (-)
G1523234 NA other upstream 282817 18541145 ~ 18541711 (-)
G1523241 NA other upstream 303578 18561906 ~ 18567247 (-)
G1524311 NA other upstream 490797 18749125 ~ 18749395 (-)

Expression


Co-expression Network