G1523137


Basic Information

Item Value
gene id G1523137
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18296479 ~ 18297982 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1743956
GCGCCTGCAGTTGCTGGAACGTCTTGATTCTCTTCTTGAAGCGCGAGGGCAGTACGAAGTCACAGCCCCGGGAGAGGAAGGCTAGCTCACATCTTAAATCAGGGTCCCCCCGCAGTGTCTCTTTAGACTCCTTGATAAACATGACGTTGATAGGAGAGGATGAAGATGACGATAGGAGAAGATGAAGATGATGATAGGAGAGGATGAAGATGACGATGagaggatgaagatgatgataggagaggatgaagatgaaGATGACGATGATAGGAGAGGATGAAGATGACGATGAGAGGATGAAGGTGACGTTGATAGGAGAGGATGAAGGTGACGATGATaggagaggatgaagatgatgataggagaggatgaagatgatgatAGGAGAGGATGAAGGTGACGATGATAGGAGAGGATGAAGGTGACGATGATAGGAGAGGATGAAGGTGACGATGATAGGAGAGGATGAAGGAGACGATGATAGGAGAGGATGAAGGTGACGATGATAGGAGAGGATGAAGGTGACGATGATTACTTTATTGCATCCGTTTCTTAGGTAGCGGTTCAAAGTTCAAAGTTCATTCAGATTCCCAGCTGGTGTTGGAGGGTGCAGCAAAACCCCCTGAGAGACAGATGAACCACAGACCGGCCCTGGCGTAGAATTACAGACAGGACTACTAGACAACCAACAGCTCCATGGAGTCTACAGTCTATCTACAGACCACAGCTCTATACTTCTCTCTTCTTTTCAGTTGTTCACTCTCTCCATGCAATGGATTCCAGCTTTCTATTTCTTTTCTCCAAAGTATTTTATTCTCTCCATCCTGTCCAACGGAACGAGGGATGATTCCTTTCAGGTATCCAGGAGAACAGATTGAAGGAGACAAGAACAAAAAGAGTAACAGAATATATCGCAAAAGAAAAGAGTCCCCCAAGAGAAGAAAATGAGTCCACAGAGAAACGAAGGAAGATCCAACTGGACAGTGTTCCAGGTCGGTTCTGAGTCCACCTGCAGCTAGCTGGTTCTCACTCCATGTCtgctagtcacacacacacactcacactctttcTCAATCAAACTTTCCTGTTGCTTCACTTCCACACAAACACTCTCTAATATTGACAAATACTGTAGACCCACACTCAGACACACCTATATTTTCTCTCTCAGGGTTGAGTCCGTAGCTTATCCGTGTGTGTGCACTGATATATTTTCCGTGTGTTAGCTCCTAGCGTATCTTGTAAAACCATAGCGGCGGGCCAGCCGGTGGCTATACGTGGCCCAACAGAGTGCTTCTCTCTGGGGTATAAAAGTTCCCGTCTCCCCTGTGGTTCTCTGGTTCTACGGTATAGT
>TU1743959
GCGCCTGCAGTTGCTGGAACGTCTTGATTCTCTTCTTGAAGCGCGAGGGCAGTACGAAGTCACAGCCCCGGGAGAGGAAGGCTAGCTCACATCTTAAATCAGGGTCCCCCCGCAGTGTCTCTTTAGACTCCTTGATAAACATGACGTTGATAGGAGAGGATGAAGATGACGATAGGAGAAGATGAAGATGATGATAGGAGAGGATGAAGATGACGATGagaggatgaagatgatgataggagaggatgaagatgaaGATGACGATGATAGGAGAGGATGAAGATGACGATGAGAGGATGAAGGTGACGTTGATAGGAGAGGATGAAGGTGACGATGATaggagaggatgaagatgatgataggagaggatgaagatgatgatAGGAGAGGATGAAGGTGACGATGATAGGAGAGGATGAAGGTGACGATGATAGGAGAGGATGAAGGAGACGATGATAGGAGAGGATGAAGGTGACGATGATAGGCGAGGATGAAGGTGACAATGATAGGAGAGGATGAAGGAGACGATGATAGGAGAGGATGAAGGTGACGATGACAGGAGAGGATGAAGGTGACGATGATAGGAGAGGATGAAGGAGACGATGATAGGAGAGGATGAAGGTGACGATGATAGGAGAGGATGAAGGTGACGATGATTACTTTATTGCATCCGTTTCTTAGGTAGCGGTTCAAAGTTCAAAGTTCATTCAGATTCCCAGCTGGTGTTGGAGGGTGCAGCAAAACCCCCTGAGAGACAGATGAACCACAGACCGGCCCTGGCGTAGAATTACAGACAGGACTACTAGACAACCAACAGCTCCATGGAGTCTACAGTCTATCTACAGACCACAGCTCTATACTTCTCTCTTCTTTTCAGTTGTTCACTCTCTCCATGCAATGGATTCCAGCTTTCTATTTCTTTTCTCCAAAGTATTTTATTCTCTCCATCCTGTCCAACGGAACGAGGGATGATTCCTTTCAGGTATCCAGGAGAACAGATTGAAGGAGACAAGAACAAAAAGAGTAACAGAATATATCGCAAAAGAAAAGAGTCCCCCAAGAGAAGAAAATGAGTCCACAGAGAAACGAAGGAAGATCCAACTGGACAGTGTTCCAGGTCGGTTCTGAGTCCACCTGCAGCTAGCTGGTTCTCACTCCATGTCtgctagtcacacacacacactcacactctttcTCAATCAAACTTTCCTGTTGCTTCACTTCCACACAAACACTCTCTAATATTGACAAATACTGTAGACCCACACTCAGACACACCTATATTTTCTCTCTCAGGGTTGAGTCCGTAGCTTATCCGTGTGTGTGCACTGATATATTTTCCGTGTGTTAGCTCCTAGCGTATCTTGTAAAACCATAGCGGCGGGCCAGCCGGTGGCTATACGTGGCCCAACAGAGTGCTTCTCTCTGGGGTATAAAAGTTCCCGTCTCCCCTGTGGTTCTCTGGTTCTACGGTATAGT

Function

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1743956 False 1354 lncRNA 0.46 2 18296479 18297982
TU1743959 True 1479 lncRNA 0.47 2 18296479 18297982

Neighbor

gene id symbol gene type direction distance location
LOC110497068 LOC106574469 coding downstream 58586 18231889 ~ 18237893 (-)
LOC110495699 LOC106574468 coding downstream 65055 18224782 ~ 18231424 (-)
LOC110495700 LOC106594337 coding downstream 129116 18160955 ~ 18167363 (-)
LOC118941107 NA coding downstream 242125 18051980 ~ 18054354 (-)
trnal-cag-26 NA coding downstream 254980 18041417 ~ 18041499 (-)
ghs-r ghsr coding upstream 147101 18445083 ~ 18447303 (-)
LOC110497072 LOC106574477 coding upstream 201844 18499826 ~ 18513863 (-)
LOC118941108 LOC106575244 coding upstream 297802 18595784 ~ 18603170 (-)
LOC110495729 LOC106574585 coding upstream 306615 18604597 ~ 18617046 (-)
LOC110497079 LOC106575437 coding upstream 331109 18629091 ~ 18643487 (-)
G1523102 NA non-coding downstream 38151 18253215 ~ 18258328 (-)
G1523122 NA non-coding downstream 43448 18252697 ~ 18253031 (-)
G1523116 NA non-coding downstream 56344 18239921 ~ 18240135 (-)
G1523115 NA non-coding downstream 56794 18239150 ~ 18239685 (-)
G1523114 NA non-coding downstream 57743 18238518 ~ 18238736 (-)
G1523143 NA non-coding upstream 4520 18302502 ~ 18302840 (-)
G1523160 NA non-coding upstream 20061 18318043 ~ 18318537 (-)
G1523289 NA non-coding upstream 190718 18488700 ~ 18489891 (-)
G1523230 NA non-coding upstream 254782 18552764 ~ 18554450 (-)
G1523315 NA non-coding upstream 273087 18571069 ~ 18572942 (-)
LOC110510546 LOC106575482 other downstream 551581 17719504 ~ 17815003 (-)
LOC118941106 LOC106575483 other downstream 593726 17685551 ~ 17702827 (-)
LOC110528763 LOC106575486 other downstream 626520 17640874 ~ 17671930 (-)
G1522794 NA other downstream 846301 17441659 ~ 17450178 (-)
G1523149 fndc3b other upstream 134111 18432093 ~ 18436052 (-)
G1523234 NA other upstream 243163 18541145 ~ 18541711 (-)
G1523241 NA other upstream 263924 18561906 ~ 18567247 (-)
G1524311 NA other upstream 451143 18749125 ~ 18749395 (-)

Expression


Co-expression Network