G1522716


Basic Information

Item Value
gene id G1522716
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18472780 ~ 18473999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1743446
cccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttattttcgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtagggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttacattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttgaacaacactttttatggatatctttaagaaatggatttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaatgtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaactctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcattattagtcatttaggtcaacattggattattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcc

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1743446 True 1144 lncRNA 0.43 2 18472780 18473999

Neighbor

gene id symbol gene type direction distance location
LOC110495706 LOC105019796 coding upstream 40264 18309981 ~ 18432516 (+)
LOC110497069 ppp2r3a coding upstream 167543 18251738 ~ 18305237 (+)
LOC110517300 LOC106575446 coding upstream 248640 18176721 ~ 18224140 (+)
LOC110495710 LOC106574671 coding upstream 314279 18156850 ~ 18158501 (+)
LOC110495707 LOC106574672 coding upstream 327299 18143136 ~ 18145481 (+)
tspan37 LOC106574474 coding downstream 6778 18480777 ~ 18484626 (+)
elavl1a LOC106574475 coding downstream 14723 18488722 ~ 18498859 (+)
LOC110495722 NA coding downstream 67899 18541898 ~ 18544024 (+)
LOC110495724 LOC106575427 coding downstream 76041 18550040 ~ 18554461 (+)
diras1b LOC106574480 coding downstream 81556 18555555 ~ 18564107 (+)
G1522637 NA non-coding upstream 156 18463922 ~ 18472624 (+)
G1522708 NA non-coding upstream 4291 18467509 ~ 18468489 (+)
G1522707 NA non-coding upstream 13543 18458691 ~ 18459237 (+)
G1522632 NA non-coding upstream 61529 18392984 ~ 18411251 (+)
G1522685 NA non-coding upstream 90886 18380682 ~ 18381894 (+)
G1522725 NA non-coding downstream 27726 18501725 ~ 18502232 (+)
G1522714 NA non-coding downstream 67159 18541158 ~ 18541702 (+)
G1522717 NA non-coding downstream 70665 18544664 ~ 18546925 (+)
G1522684 NA other upstream 92522 18379087 ~ 18380258 (+)
G1522438 NA other upstream 612166 17856141 ~ 17860614 (+)
G1522437 LOC106575479 other upstream 628766 17839669 ~ 17844014 (+)
G1522415 LOC106575491 other upstream 706086 17766219 ~ 17766694 (+)
LOC110527374 LOC106592210 other upstream 845136 17623786 ~ 17631132 (+)
LOC110495728 LOC106574584 other downstream 120335 18594324 ~ 18595682 (+)
LOC118936474 LOC106574488 other downstream 241863 18702289 ~ 18722091 (+)
LOC110495746 LOC106574508 other downstream 485445 18959384 ~ 18978475 (+)
G1523506 NA other downstream 548006 19022005 ~ 19022395 (+)
G1523526 LOC106574589 other downstream 652265 19101756 ~ 19142175 (+)

Expression


Co-expression Network