G1523446


Basic Information

Item Value
gene id G1523446
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18878257 ~ 18878917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1744352
ctgccTAAACATTGTTTACAAAGTCCCCCACCGTCTCAGTCTTGTTCAGCATTTACCCAATAAACAATTATACATAAACAACTATTTTATTGATGTATCGGTGGCTAGTGCTACCCTATTGCATTGCGCATGTGTAGACGGCAGAGAGAGCGAGTTGTGTCCTTGGTTATTACAACAAATCATGTTATATCAGCCATgttgttggagagagagaaatagggcaCTCACCGATAACCACACAGAAAACATCAACTAGAATCAGCATATTTTTCTTGGGAACTGGTAGCTCCATCTTCACGCTTCTACTCTCTCCGAAGAAGAATGATCAAAACTGCAAACGTTATTGGGAGAAGTTTAGTTGCAGAGGTAAGAGAAAAATAGTGTGAACAATCAGATGTGCTTGTTCTTCCGGATTTCTCTCCCGTAGCCTACCTGGCCTACCTGTTTAGGCCTACGCTCTATAGGTGAGTCGGGGAAAGACGCAACTGTagtatacaccacacacacagtgtccagCGCTGTCAACACACGGACATGTGTGGGTCGCGCATTGTCCAAAAGCAAGCAGAGATAACGGAAGAAAAAAAACTTCGGAAATCGTTTCCTTTACGGAAAGTTGAGAATGGGCTCTTTCCCCAACTAAAGGCGCGTGTGCGTTTAC
>TU1744356
ctgccTAAACATTGTTTACAAAGTCCCCCACCGTCTCAGTCTTGTTCAGCATTTACCCAATAAACAATTATACATAAACAACTATTTTATTGATGTATCGGTGGCTAGTGCTACCCTATTGCATTGCGCATGTGTAGACGGCAGAGAGAGCGAGTTGTGTCCTTGGTTATTACAACAAATCATGTTATATCAGCCATgttgttggagagagagaaatagggcaCTCACCGATAACCACACAGAAAACATCAACTAGAATCAGCATATTTTTCTTGGGAACTGGTAGCTCCATCTTCACGCTTCTACTCTCTCCGAAGAAGAATGATCAAAACTGCAAACGTTATTGGGAGAAGTTTAGTTGCAGAGGTAAGAGAAAAATAGTGTGAACAATCAGATGTGCTTGTTCTTCCGGATTTCTCTCCCGTAGCCTACCTGGCCTACCTGTTTAGGCCTACGCTCTATAGGTGAGTCGGGGAAAGACGCAACTGTagtatacaccacacacacagtgtccagCGCTGTCAACACACGGACATGTGTGGGTCGCGCATTGTCCAAAAGCAAGCAGAGATAACGGAAGAAAAAAAACTTCGGAAATCGTTTCCTTTACGGAAAGTTGAGAATGG
>TU1744351
TCAACTAGAATCAGCATATTTTTCTTGGGAACTGGTAGCTCCATCTTCACGCTTCTACTCTCTCCGAAGAAGAATGATCAAAACTGCAAACGTTATTGGGAGAAGTTTAGTTGCAGAGGTAAGAGAAAAATAGTGTGAACAATCAGATGTGCTTGTTCTTCCGGATTTCTCTCCCGTAGCCTACCTGGCCTACCTGTTTAGGCCTACGCTCTATAGGTGAGTCGGGGAAAGACGCAACTGTagtatacaccacacacacagtgtccagCGCTGTCAACACACGGACATGTGTGGGTCGCGCATTGTCCAAAAGCAAGCAGAGATAACGGAAGAAAAAAAACTTCGGAAATCGTTTCCTTTACGGAAAGTTGAGAATGG
>TU1744353
TCAACTAGAATCAGCATATTTTTCTTGGGAACTGGTAGCTCCATCTTCACGCTTCTACTCTCTCCGAAGAAGAATGATCAAAACTGCAAACGTTATTGGGAGAAGTTTAGTTGCAGAGGTAAGAGAAAAATAGTGTGAACAATCAGATGTGCTTGTTCTTCCGGATTTCTCTCCCGTAGCCTACCTGGCCTACCTGTTTAGGCCTACGCTCTATAGGTGAGTCGGGGAAAGACGCAACTGTagtatacaccacacacacagtgtccagCGCTGTCAACACACGGACATGTGTGGGTCGCGCATTGTCCAAAAGCAAGCAGAGATAACGGAAGAAAAAAAACTTCGGAAATCGTTTCCTTTACGGAAAGTTGAGAATGGGCTCTTTCCCCAACTAAAGGCGCGTGTGCGTTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1744352 False 661 lncRNA 0.44 1 18878257 18878917
TU1744356 False 626 lncRNA 0.43 1 18878257 18878882
TU1744351 False 378 lncRNA 0.45 1 18878505 18878882
TU1744353 True 413 lncRNA 0.46 1 18878505 18878917

Neighbor

gene id symbol gene type direction distance location
LOC110495737 LOC106574496 coding upstream 25395 18842536 ~ 18852862 (+)
LOC110495735 LOC106574495 coding upstream 36145 18806958 ~ 18842112 (+)
LOC110495734 LOC106574494 coding upstream 78374 18792397 ~ 18799883 (+)
LOC110495733 LOC106574492 coding upstream 93269 18776709 ~ 18784988 (+)
LOC110497080 NA coding upstream 136497 18739823 ~ 18741760 (+)
ebi3 ebi-3 coding downstream 24948 18903865 ~ 18905404 (+)
keap1a LOC106574506 coding downstream 46269 18925186 ~ 18946636 (+)
LOC110495746 LOC106574508 coding downstream 80467 18959384 ~ 18978475 (+)
LOC110495744 LOC106575417 coding downstream 99885 18978802 ~ 18982514 (+)
LOC110513694 LOC106574589 coding downstream 113514 18992431 ~ 18999113 (+)
G1523445 NA non-coding upstream 402 18877555 ~ 18877855 (+)
G1523444 NA non-coding upstream 3854 18873939 ~ 18874403 (+)
G1523443 NA non-coding upstream 5244 18872788 ~ 18873013 (+)
G1523442 NA non-coding upstream 6924 18871091 ~ 18871333 (+)
G1523441 NA non-coding upstream 7239 18870659 ~ 18871018 (+)
G1523449 NA non-coding downstream 3114 18882031 ~ 18882421 (+)
G1523487 NA non-coding downstream 76992 18955909 ~ 18956212 (+)
G1523488 NA non-coding downstream 78102 18957019 ~ 18957371 (+)
G1523498 NA non-coding downstream 112398 18991315 ~ 18991585 (+)
G1523517 NA non-coding downstream 172649 19051566 ~ 19052036 (+)
LOC118936474 LOC106574488 other upstream 159612 18702289 ~ 18722091 (+)
LOC110495728 LOC106574584 other upstream 282657 18594324 ~ 18595682 (+)
G1522684 NA other upstream 497999 18379087 ~ 18380258 (+)
G1522438 NA other upstream 1017643 17856141 ~ 17860614 (+)
G1522437 LOC106575479 other upstream 1034243 17839669 ~ 17844014 (+)
G1523506 NA other downstream 143088 19022005 ~ 19022395 (+)
G1523526 LOC106574589 other downstream 247347 19101756 ~ 19142175 (+)
LOC118941116 LOC106574589 other downstream 296946 19168683 ~ 19177819 (+)
G1523542 NA other downstream 322110 19201027 ~ 19202188 (+)

Expression


Co-expression Network