G1524393


Basic Information

Item Value
gene id G1524393
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18945719 ~ 18948078 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1745446
TAATAGGGTTACAAGTAAAACTACTGCtccaactactaatacaactaataaaactaagtacctataatatatacataaactcagcaaaaaaggaaaCGTCCTCTccctgtcaactgcatttattttcagcaaacttaacgtgtaaatatttgtattaacataccaagactcaacaactgagacataaactgaacaagttccacagacatgtgactaacagaaatagaataatgtgtccctgaacaaagggggggtcaaaatcaaaagtaacagtcagtatctggtgtggttaccagctgcattaagtactgcagtgcatctcctcctcatggactgcaccagatttgccagttcttgctgcgAGATGTGACCCCACTCTTCCACCGAGGCacatgcaagttcccggacatttctggggggaatggccctagccctcaccctccgatccaacaggtctgagacgtgctcaatgggattgagatccaggcttttcgctggccatggcagaacactgacattcagtcttgcaggaaatcacacacagaacgagtagtatggctggtggcattgtcatgctggagggtcatgtcaggatgagcctgcaggaagggggaggaggggaggaggatgtcttccctgtaacgcatagcgctgagattgcctgcaatgacaacaagctcagtccgatgatgctgtgacaccccagaccatgacggaccctccacctccaaatcgatcccgctccagagtacaggcctcggtgtaacgctcattccttcgacgataaacgcaaatccgaccatcacccctggtgagacaaaaatgCAACTCAAAAGCGCAACTTTTTGCCTATCCTGtgtggtccagcgatggtgggtttgtgcccgtaggcgacgttgttgccggtgatgtctggtgaagacctgccttacaacaggcctacaagccctcagtccagcctctctcagcctatcgcagacagtctgagcactgatggagggattgtgcattcctggtgtaactcgggcaattgttgttgccatcctgtaactgtcccgcaggtgtgatgttcggatgtaccgatcctgtgcaggtcttgttacacgtggtctgccaatgcgaggacgatcagctgtccgtcctgtctccctgtagcgctgtcttaggcgtctcacagtacgaacattgcaatttattgccttggccacatctgcagtcctcatgcctccttgcagcatgcctaaggcacattcatgcagatgagcagggaccctgggcatctttcttttggtgtttttcagagtcagtagaaaggcctctttagtgtcctaagttttcataactgtgaccttaattgcctaccgtctgtaagctgttagtgtcttaacgaccgttccacaggtgcatgttcattatttgtttatggttcattgaacaagcatgggaaacagtgtttaaaccctttaacaatggagatctgtgaagttatttggatttttacgaattatctttgaaagacagagtcttgaaaaagggacgtttctttttttgatgagtttacATACAAATTTCTTCACATGGTGATGTTTCTATTAGCTGGTTAAAAACACAAACTGTTTGTTCTTAACATTTGAAAAATGGCTCTTAAATTCACTGTGATTCCAGTCAGTTGGGTCTTTGTAGCCGAAAGATCTTACTCTAACCTCATGATGTACCCTTGGAATGTGTAATGGCTGCTGTTGTCGAAATATGTAATGTCAGTCTTGTAAAGTTAGGTGTTCCTTAAATTTAAGTTGAtagatttaaaaataaattgGGCAATGTGTCTTATAATGGCATCATACGAAGGTTCATGcccattctagtattctaattcctaactCTTTGTCTGTAGCACCCTAATAATGGTGAGGTCACTTTGAAGTTATTGTGAGGTCACTTCCTCCCCCTGGTCCACTTCCTACTGACTCCACATAAAATTAGAATGATCAGAACAGACATTCCTGATTAATGCAAACTTTgtggctttggataaaagtgatCTAAGAGCTTTGTACTTTCTACTCATTCTAATTCTACTGCAACAAGTCCTGCTCTGCCGCCATGTTGAGTCAAATATAAAAAGAGTTATGATGAGTCATGTCTCCTCGCTCTAACTCTATGtcacttcctcttcttcttcctcctcggGCAGGTTGCCGGGGCAGGGCTCCATTGTTACTGCGACGGCCATTCCGCTGCGTCCTAGCAACATGTTGGTGATGGACGTCCACTGGTTGGTGTCAGGGCAGTAACTCTCAACACTGGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC105030512

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1745446 True 2308 lncRNA 0.45 2 18945719 18948078

Neighbor

gene id symbol gene type direction distance location
crlf1a LOC106575381 coding downstream 30031 18909006 ~ 18915688 (-)
LOC110497081 NA coding downstream 37761 18905515 ~ 18907958 (-)
LOC110495741 LOC106574501 coding downstream 43365 18898437 ~ 18902354 (-)
LOC110495739 LOC106575386 coding downstream 49441 18891721 ~ 18896278 (-)
LOC110495742 thegl coding downstream 59499 18882965 ~ 18904709 (-)
acvr1l LOC106574510 coding upstream 239329 19187407 ~ 19200059 (-)
LOC110495751 LOC106574518 coding upstream 374578 19322656 ~ 19384501 (-)
LOC118936284 LOC106574517 coding upstream 405798 19353876 ~ 19373333 (-)
LOC110495759 LOC106586086 coding upstream 526231 19474309 ~ 19475867 (-)
LOC110495761 LOC106574524 coding upstream 540983 19489061 ~ 19495122 (-)
G1524367 NA non-coding downstream 63069 18882028 ~ 18882650 (-)
G1524366 NA non-coding downstream 64907 18880612 ~ 18880812 (-)
G1524364 NA non-coding downstream 67473 18877865 ~ 18878246 (-)
G1524363 NA non-coding downstream 70215 18875284 ~ 18875504 (-)
G1524396 NA non-coding upstream 1039 18949117 ~ 18949348 (-)
G1524397 NA non-coding upstream 1456 18949534 ~ 18949771 (-)
G1524398 NA non-coding upstream 3947 18952025 ~ 18952268 (-)
G1524400 NA non-coding upstream 6164 18954242 ~ 18954476 (-)
G1524417 LOC106575417 non-coding upstream 31814 18979892 ~ 18980206 (-)
G1524311 NA other downstream 196324 18749125 ~ 18749395 (-)
G1523241 NA other downstream 378472 18561906 ~ 18567247 (-)
G1523234 NA other downstream 404008 18541145 ~ 18541711 (-)
ghs-r ghsr other downstream 499158 18445083 ~ 18447303 (-)
G1523149 fndc3b other downstream 509667 18432093 ~ 18436052 (-)
G1524473 LOC106574589 other upstream 195907 19143985 ~ 19164126 (-)
LOC110495764 LOC106574529 other upstream 625550 19573628 ~ 19577133 (-)
G1524755 LOC106581475 other upstream 774667 19722745 ~ 19730068 (-)
LOC110497093 LOC106574562 other upstream 1623018 20558557 ~ 20595753 (-)
G1527230 NA other upstream 3313978 22262056 ~ 22262462 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G67309 LOC105030512,LOC106569888 non-coding CM030127.1 CM030127.1 41304187 ~ 41305221 (+)