G1524417 (LOC106575417)


Basic Information

Item Value
gene id G1524417
gene name LOC106575417
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18979892 ~ 18980206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1745470
cacagggcctgtTTAGAATAGGATAGAATCCCACAAGGGAAATTAAACCTACAGAACTCTCCTTTAAAAGCAGACACAGACCTGGTTGTCTAGTAGGTATCTGAGCAGTTTCAGGGTTCCAGGTCCAGTGGGTTCCCCTCTCAGGGCTTTACACGCAGCCAGGAGAGGAGTCTCTCCTCCTGGGTTTCTCTCGTTGACCTGGGCACCCCCCTCCAGGAGCAGCCTAACGAGGCGAAGCTTCCCCAGCCTCGCTGCTCCAATCAGGGGACTGCCGTCTGGCAGGAGGTCCTGGGGGACCGACATGgtctggaggag

Function

NR:

description
ankyrin repeat domain-containing protein 34B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1745470 True 315 lncRNA 0.57 1 18979892 18980206

Neighbor

gene id symbol gene type direction distance location
crlf1a LOC106575381 coding downstream 64204 18909006 ~ 18915688 (-)
LOC110497081 NA coding downstream 71934 18905515 ~ 18907958 (-)
LOC110495741 LOC106574501 coding downstream 77538 18898437 ~ 18902354 (-)
LOC110495739 LOC106575386 coding downstream 83614 18891721 ~ 18896278 (-)
LOC110495742 thegl coding downstream 93672 18882965 ~ 18904709 (-)
acvr1l LOC106574510 coding upstream 207201 19187407 ~ 19200059 (-)
LOC110495751 LOC106574518 coding upstream 342450 19322656 ~ 19384501 (-)
LOC118936284 LOC106574517 coding upstream 373670 19353876 ~ 19373333 (-)
LOC110495759 LOC106586086 coding upstream 494103 19474309 ~ 19475867 (-)
LOC110495761 LOC106574524 coding upstream 508855 19489061 ~ 19495122 (-)
G1524400 NA non-coding downstream 25416 18954242 ~ 18954476 (-)
G1524398 NA non-coding downstream 27624 18952025 ~ 18952268 (-)
G1524397 NA non-coding downstream 30121 18949534 ~ 18949771 (-)
G1524396 NA non-coding downstream 30544 18949117 ~ 18949348 (-)
G1524393 NA non-coding downstream 31814 18945719 ~ 18948078 (-)
G1524418 LOC106575417 non-coding upstream 574 18980780 ~ 18983082 (-)
G1524421 NA non-coding upstream 10764 18990970 ~ 18991231 (-)
G1524422 NA non-coding upstream 11246 18991452 ~ 18991741 (-)
G1524423 NA non-coding upstream 13258 18993464 ~ 18993760 (-)
G1524429 NA non-coding upstream 38156 19018362 ~ 19018838 (-)
G1524311 NA other downstream 230497 18749125 ~ 18749395 (-)
G1523241 NA other downstream 412645 18561906 ~ 18567247 (-)
G1523234 NA other downstream 438181 18541145 ~ 18541711 (-)
ghs-r ghsr other downstream 533331 18445083 ~ 18447303 (-)
G1523149 fndc3b other downstream 543840 18432093 ~ 18436052 (-)
G1524473 LOC106574589 other upstream 163779 19143985 ~ 19164126 (-)
LOC110495764 LOC106574529 other upstream 593422 19573628 ~ 19577133 (-)
G1524755 LOC106581475 other upstream 742539 19722745 ~ 19730068 (-)
LOC110497093 LOC106574562 other upstream 1590890 20558557 ~ 20595753 (-)
G1527230 NA other upstream 3281850 22262056 ~ 22262462 (-)

Expression


Co-expression Network