G1524418 (LOC106575417)


Basic Information

Item Value
gene id G1524418
gene name LOC106575417
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18980780 ~ 18983082 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1745471
agctggggcaaaactgtgacaccaatcaggccctccaGGACTGGAATTACCCACCCCTGTTACGAGATCAAATGCCAAAATTAgtacataccctaatctaactgcctgtagctcaggatctgaagcaaggatatgtatattcttgataccatttgaaaggaaacactttgaagtttgtgttaatgtgaaattaatgtaggagaatataacacattagatctggtgaaAGACATTAAACAACcgttttttttgtaccatcatctttgaaatgcaagagaaaggccaaaaTGAATTATTctagcccaggtgcaatttagactttggccactagatgacagcagtgtatgtgcaaagttttaaaATGATCCAATGAACTATTGCATATCTCtattaaaaatgttttatcaagactgcccaaatgtgcctaatcggttaattcatacattttcaagttcataattgtgcactctcctcaaatagCATGGTTATTCCTTCACTGTaatatagctactgtaaattggacagtgcagttagattagcaagaatatcagatatgtcctgtgatttgtttttgtttcttacaacctcatgctaatcacattagcctacgttagcggAATCCTGTAGATAAAGTACACAGTCAAATTAACATTTGCTTTAAAGCCCTCACTAAGAATACTGACTAACTTCTTGTAAAGGTAGGGGCATGTGACTATCATAAAGCAAGACAGACTAAAGTTCAGTGACAGCGACAACTTTCAGTTTGGGGAAAACGCTACAACACAAGTGAATAAAGGATGGGTTTTATATCCATACAGTATAAATAGGAAATATCTAATAAACAAATGATTCCAACTAATTCTTTGGATTGGAGATTACTGCTTTAGACTGTTGATATGAATCCACACATGCAGGTCAGAAAGCACTAAATAAGTGTCCAGCATGCTCTAGAGGTTATTACAAGTAACTACACATATCACACCACAACAACTAACATAGGGTCTCACTCCcgctcctcctttcctcctctccctcttatctcctctgttcttcctctattcctcctcctctcctcctccccctctcctctcagcggCTCCAGCTGGATAGAGTGACGTCGAGGTGGCCTCtcactggagggagggagagggggaacaaaggaggacgaggaggtggaggagagggatagaggaggcagAAAGCCCGGTCTAAATATTGTTTTAAAGGGaagagcaggggaggaggagagagtgcgagaaaggggcggagtgagagaaagaggggaagagggggagggcagCTGCATCCGACACACCATGCCTACACCTGCAACAGGTAGGCCAAGGGGCGGGACCTGTAGGTGAGACTCATAACACGATAGGGGAGGCAGGTGAAGAAGGGGTGGAGCTGGAGTCAAGGAAGGGAGGGTGTTCCTACGAGCTCCCTGCcagcgagagggagagcagggaggaaGTTTGTCCACAGAGCACTTCCGGGTCATTGGGTCGCCTCCGATGACATTAGATCCCCCTCTACAATGTAAAGCAGTTTGAGTACTGGGGTGTTCTCTGTATAAATCCAAGGTGGAACCTCCAGGGGCTAGCCTCCTCTCAGGGGACAGTCTGCTCTGGGCTGCCTGGGAAAGGTGCTCCTCtgtgggaaagaggagagaacaaGAGGCCCCAGAAGAGGTCTCGTTATGGTAAAGATGGACAGATCGACTCTCCTTGTCATCTCCCACCTCTTCCTCTAGCTCGGccttctccctcctttccttcttaAAGTCGTGATGAAGAGAAGCTTTTTCTCcctttcctccttcctctcctccctcttcctctaccttcctttccctccttccctcttggTAGACCTTGTTAAGTCGAGCCAGATTGTGAATAGCTAGCCATGGTTCAGACCACTGTCGCTGTCTGGGAGGGGTGATACAGGACTGGTCCACTGGACTCAGCTCACATGGGGAgaatctgctgctgctgctgccactcCCCCTCTTACCTAGGATGAGATAAGAAAGGATGAGACAGGTTCCTGATGTTTaacaccttccctccctccctctaacctgATCCTCTGAAATTGAACACATTCTCTCCCTCAAGTGAGTTGGGTGAGCCCGTCttgatgatgatgtcagagggTGACATGCAGGTGACAGGTGATGCATCGGGAGACGGCAGAACGTTCAGGTAGCGCCTCGTCACCGGTCCTCCGCTCACACCCATCTccgtggtgatgatgatgatgtcacggCCTTTGGCGCGGCATGCGTCCAGTAGCACCTG

Function

NR:

description
uncharacterized protein LOC110495744

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1745471 True 2303 lncRNA 0.47 1 18980780 18983082

Neighbor

gene id symbol gene type direction distance location
crlf1a LOC106575381 coding downstream 65092 18909006 ~ 18915688 (-)
LOC110497081 NA coding downstream 72822 18905515 ~ 18907958 (-)
LOC110495741 LOC106574501 coding downstream 78426 18898437 ~ 18902354 (-)
LOC110495739 LOC106575386 coding downstream 84502 18891721 ~ 18896278 (-)
LOC110495742 thegl coding downstream 94560 18882965 ~ 18904709 (-)
acvr1l LOC106574510 coding upstream 204325 19187407 ~ 19200059 (-)
LOC110495751 LOC106574518 coding upstream 339574 19322656 ~ 19384501 (-)
LOC118936284 LOC106574517 coding upstream 370794 19353876 ~ 19373333 (-)
LOC110495759 LOC106586086 coding upstream 491227 19474309 ~ 19475867 (-)
LOC110495761 LOC106574524 coding upstream 505979 19489061 ~ 19495122 (-)
G1524417 LOC106575417 non-coding downstream 574 18979892 ~ 18980206 (-)
G1524400 NA non-coding downstream 26304 18954242 ~ 18954476 (-)
G1524398 NA non-coding downstream 28512 18952025 ~ 18952268 (-)
G1524397 NA non-coding downstream 31009 18949534 ~ 18949771 (-)
G1524396 NA non-coding downstream 31432 18949117 ~ 18949348 (-)
G1524421 NA non-coding upstream 7888 18990970 ~ 18991231 (-)
G1524422 NA non-coding upstream 8370 18991452 ~ 18991741 (-)
G1524423 NA non-coding upstream 10382 18993464 ~ 18993760 (-)
G1524429 NA non-coding upstream 35280 19018362 ~ 19018838 (-)
G1524431 NA non-coding upstream 44012 19027094 ~ 19028192 (-)
G1524311 NA other downstream 231385 18749125 ~ 18749395 (-)
G1523241 NA other downstream 413533 18561906 ~ 18567247 (-)
G1523234 NA other downstream 439069 18541145 ~ 18541711 (-)
ghs-r ghsr other downstream 534219 18445083 ~ 18447303 (-)
G1523149 fndc3b other downstream 544728 18432093 ~ 18436052 (-)
G1524473 LOC106574589 other upstream 160903 19143985 ~ 19164126 (-)
LOC110495764 LOC106574529 other upstream 590546 19573628 ~ 19577133 (-)
G1524755 LOC106581475 other upstream 739663 19722745 ~ 19730068 (-)
LOC110497093 LOC106574562 other upstream 1588014 20558557 ~ 20595753 (-)
G1527230 NA other upstream 3278974 22262056 ~ 22262462 (-)

Expression


Co-expression Network