G1524443


Basic Information

Item Value
gene id G1524443
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19068654 ~ 19124540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1745498
gTGTGCCatgtttaaagttaatttgtggaatttctttccttaatgcgtttgaatcaatcaattgtgttgtgacaaggtaggggttgtttacagaagattgccctatttggaGAAAAttaacaagtccatattatggcaagaacaggtcaaataagcaaagagaaacaacagtccatcattaccttaagacatgaagatcagtcaatcaggaaagtttcaagaactttgaaagtttcttcaagtgcagtcgcaagaaCCATAAagcgatatgatgaaactggctctcatgaggaccaccacaggaaagaaagacccagagttacctctgctgcagaggataagttcattagagttaccagcctcataaattgcagaccaaataaatgcttcacaaagttcaagtaacagacacatctcaacatcaacttttcaaaggagactgcgtgaatcagaccttcatggtcaaaaTTCTGCAAAGagatcactactaaaggacaccaataataaaaagagacttgcttgggccaagaaacacaagcaatagacattagactggtggaaatctgtcctttggtcagatcagtccaaatttgagattttggttccaacctccgtgtctttgtgagacgcggagtaggtgaacggatgatctccgcatatgtaGTTCACAGCGTGAAtcatggaggatgaggtgtgatggtgtggggttgctttgttggtgacactgtctgtgatctatttagaattcaagcacacttaaccagcatggctaccacagcattctgcagcgatccgccatcccatctggtttgcgcttagtggaactaatcatttgttttcaacaggacaatgacccaacacacctccaggctgtgtaagggatatttgaacaagaaggagagtgatggagttctgcatcagatgatccagcttccacaatcacccgacctcatccCAAGTGAGATTGCttgggaaaagcagccaacaagtgctcagcatatgagcgaactccttcaagactgttgaaaaggcattccaggtgaagatggttgagagaatgccaagtgtgtgcaaagctgacatcaagtAAGTTTAgtaagttcaagacaactggtaaCTCGGGAAAAAGGAGCTACGACTTGGAAAATACGTTTTCATTTTTCATCCAGCTCGGAATTGTAAAtttggaactcgggcctctttaaatcaaatcaaatcaaatgtatttatatagaccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaagagCTCTTTaaagagctacgacctgaagatcactgacataaTCATGATTCAAgctttttttgttgagttcccagttgtcttaaaaGTACCatgaatccagagaatgccagaccttgattacaaagtttgatgacaaaatttgcccacgaaggaccgctgcaccaccttcctgttcaagtgagcacagcacaacaagttgagtccaaaaatgtcttgtatgatTCATAAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1745498 True 1566 lncRNA 0.42 2 19068654 19124540

Neighbor

gene id symbol gene type direction distance location
crlf1a LOC106575381 coding downstream 152966 18909006 ~ 18915688 (-)
LOC110497081 NA coding downstream 160696 18905515 ~ 18907958 (-)
LOC110495741 LOC106574501 coding downstream 166300 18898437 ~ 18902354 (-)
LOC110495739 LOC106575386 coding downstream 172376 18891721 ~ 18896278 (-)
LOC110495742 thegl coding downstream 182434 18882965 ~ 18904709 (-)
acvr1l LOC106574510 coding upstream 62867 19187407 ~ 19200059 (-)
LOC110495751 LOC106574518 coding upstream 198116 19322656 ~ 19384501 (-)
LOC118936284 LOC106574517 coding upstream 229336 19353876 ~ 19373333 (-)
LOC110495759 LOC106586086 coding upstream 349769 19474309 ~ 19475867 (-)
LOC110495761 LOC106574524 coding upstream 364521 19489061 ~ 19495122 (-)
G1524441 NA non-coding downstream 16185 19051933 ~ 19052469 (-)
G1524440 NA non-coding downstream 16829 19051065 ~ 19051825 (-)
G1524431 NA non-coding downstream 40462 19027094 ~ 19028192 (-)
G1524429 NA non-coding downstream 49816 19018362 ~ 19018838 (-)
G1524423 NA non-coding downstream 74894 18993464 ~ 18993760 (-)
G1524480 NA non-coding upstream 38701 19163241 ~ 19233214 (-)
G1524502 NA non-coding upstream 81689 19206229 ~ 19206601 (-)
G1524504 NA non-coding upstream 85975 19210515 ~ 19211580 (-)
G1524516 NA non-coding upstream 111901 19236441 ~ 19236658 (-)
G1524506 NA non-coding upstream 157254 19281794 ~ 19286226 (-)
G1524311 NA other downstream 319259 18749125 ~ 18749395 (-)
G1523241 NA other downstream 501407 18561906 ~ 18567247 (-)
G1523234 NA other downstream 526943 18541145 ~ 18541711 (-)
ghs-r ghsr other downstream 622093 18445083 ~ 18447303 (-)
G1523149 fndc3b other downstream 632602 18432093 ~ 18436052 (-)
G1524473 LOC106574589 other upstream 19445 19143985 ~ 19164126 (-)
LOC110495764 LOC106574529 other upstream 449088 19573628 ~ 19577133 (-)
G1524755 LOC106581475 other upstream 598205 19722745 ~ 19730068 (-)
LOC110497093 LOC106574562 other upstream 1446556 20558557 ~ 20595753 (-)
G1527230 NA other upstream 3137516 22262056 ~ 22262462 (-)

Expression


Co-expression Network