G1524473 (LOC106574589)


Basic Information

Item Value
gene id G1524473
gene name LOC106574589
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19143985 ~ 19164126 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1745534
tgtaagtttatcgatcactagacaaaacattatggacacctagcatcaaagtagcttggtcacgaaaatgagaaaagcaataaaattaattgcttacctttgatcttcggatgttttcactcacgagactcccagttacacaataaatgttccttttgttccataaagattcaaaatacctcagtttgtttggcgcgttgtgttcagaaatccacaggctcgagcggtcacaacaacgcagacaaattccaaatagtatccgtaatgtccacagaaacatgtcaaacgttttttataatcaatcctcaggttgattTTAAagtatataatcgataatatatcaaccggcactgtctctttttcagtaggagagggagagtcaaTGGCTGCaccactctgttgcgcaagcaaaactcatgcgaacacccagctatccactacGCGATGTTATCTtgctcgctcatttttcaaaataaaagcctgaaactatgtctaaagactgttgacaccttgaggaagcgataggaaagggaatctggttgatatccctttaaatggagcgaaggcaggctatggaacatatagctttcaaaatagaggccTCTTCCTGGTtttattttcctcaggttttcgcttgcaatatcagttctgttatactcacagataatattttgacagttttggaaactttagagtgttttctatcctaatctgtcaattatataattataattataataaaataaaatatcataTTCCTTCTATCAAATTCCTCTGTATCATATTCCTCTCCACCCTCCAACTCCCCCCCTGTTCTTCCTCAACTCCTCATCATTAAACACTCCCCAGATGTGTGAAAAGTCAACATTTTGTGTTTATACAGTGTTGTACAGTATGGCTTAACAAAAATCAAACAgagtaaacattttttattttatttttaaatgcttAGTTCTTTCATTGCATGCAAAAATaccatatccctccctccctactctctaTTACCCAGTCTACTCATCCATCTTCAAGCTTTCATCCCTTCCCTGCTCTTCTATCACCGTCTCAGTTCCACCTCCAGCTGGCTCCCTCTTTTTCTTCTCCtccagtctcttcctctcctctctcctcatcttttctctcttcttctcctccttttcttgaatctttctctccatctccaagaATGCAGCttgagctttctctctctttttcagctCCTCAGAACACTTCTTCTCTTTCTTAATTCTGTCTTTCATCATGTCATTATGTATCTTCATCAGCCCCTCTAACCTCTTTTTCTCTGccttttccttctcttttctttccttctctctctttttctgttctaacttctccctcttcttctcagCCTTCATGACTttcttctgctctttctctctctccttcatctctttcttctccctctttttttgcTCCTCCTCCTTGTGTtttatctcctttctctctttctcttcatctttCAACTTCTTATTCAGTTTCTTATTTTTCTCTTTTTCCTCCATCTTCAAAAATGGGATTTTCTGCATTTGGTTCATGAGCAGAAAGCCCACTCTTCCCAGGATGGTTTCTGCTCTCTCTGTTGAAACCTTCCCAATAGAGCACTTGGAATGGGCACAATCCGCCTCACTCTTCAATCCCTCCCTCGGGCTCACCTCCTCAGTGAcgctcctctcttcactctcaaTTTCAATGCCTATCCAATGATCCTAACAGGAAGACATTGACTCTAGATGTAATATTGTTCCAATGTAGCACATTCAATACATAACTGAGTGATCAACATACAATGATGGCCTCATGGGGCACCCCATTAGATTTTACAATACCTATAGATGTTCCTGGGTCCATACTAAAAGTAATACAAATGCTAACCCTAGTGAGGGGTGATGTTTTATACTATGAGCAAAGagcagcagggttggggtcaattccatttcaattccgaTCAAAAGACTCTAagattccaattctcttcaaagcattgaattgaaatggaaatgACCACCATCCCTGTAAAGTAGTAAGGTGAAATTCGACACCTACCTTTACCTCTTCCAGGGTCCAGGGCCTGGGTTCCTCATCCTCTGTCCTGCATATGGATGCTCCAACTCTAACAGGCATCTTAGTGACTACGCAGATCAGAGGGTTGGGCAGCTCATCATTGCGGGTTGCCAGAGTTAAGTTAGCATCTGAGACCAGCTGTTGAGCGTGAGGGCAGATATCCACCTCCACAGTAGTGCCCCTTCCTTTCTGATCTGGCTGCTTGGGGTCCTTGTCATGGATGCATGCCAGGCTTGGAGGATGTGCATGGACAGGGCTTTTATCACCCATCATTTCCTCTCTCTTGACAGTGGATGCAACTGCACTTTCCTCTATGTCAACTGAGCACTCTGTGGTGTTCTCAACGGTCTCCTCTGGCTGTTTGTGGTCAATGTTGTGGGTGCAGGGCAGCCTTAGAGACAGTGCTGTGGGTGCAGGAGGACTTTTTTCAGCCAAAAACTCCTCTTGGAGGACAGTGGACACGGAAGCGACTGCTTCACGGGCAACTGGACACTTGCTGGTGCCCTCTACTGCCTCCTCTGGTAGTTTGTAGTCATTGTCAAAGACAAGTTGCAGGCTTGAAGGCAGCACTAAGGGAAGACCTGTGGCTGCTGATGGATCCTCTCTATTAGCAACTGATGCCTCTGCGGCGACTGAGCACTCAGTGGCTTCCTCTATCGTCTCCTCTGgctgcttatggtcattgtccaaAACGTGTGACAAGCTTGGAGGCAGCCTTGGAGCAGGGCTTTTATCCAGGTCCTCTCCCTGGACAATGGATGTGCCTACAGCGATCTCTGTGGCAAGGGAGGACTCGGGTACATCCTCTTTTTCCTCCTTGGTCAGTTTGTGGTCAGAGTCACAGATGCATGGCGAGCTTGGAGGCAGTGCTGCAGGGTCAGGAGGGCTTTGATCAGCTCCCATGTCCTCTTTGAGGTGAGTGGACACATCATTGGTTGTTTCACTGGCAACTGGACACTTGTTGGTTCCCTCTACTGCCGCCCCTGGCAGTTTGTCGTCAAAGACACGTGGCAGACTTGGAGGCAGCATTGGGACAGGGCATTTAGCTGCTGATCTGTCCACTCCATCAACAGTAGCTGTGCCTGAAGTGGCCTCTGTAGCAAATGAGACCACATAGGATTCCTCTACTGTGTGCTCTGGAGGCATGAAGTCATCGTCAACGACTGGTGGCAGGCATGGAGGCAGCACTGAAGGAAGAATTGTAGCTGCCCATCGGTTCTCTCTCTTGACAGTGGCTGTATCTGCAGTGTCCACTGTGGCAACTCGGCACTCCGTGGCTGAAACAGCAGGCTGGGAGGTTTCCGGGACTTTGAATGAATTGCCAATGAACCGCTGAGCCAGtggtgggagggagaaaggatagAATCTGTCCTCTTCCTTGATATTAGATATTGCCACTGGAGAATCTGAGTCCTCAGTGGTTCCCTCTACTGTCTGCTGTGGTGGAATGGAGTCATCGTTAAAGAAGTGTGGCAGGTATCGATGCAGCATTGAGGAAAGATGTGTATCTGTCGACAAGTCCTCTCTTCTACCAGCAGATACATCTGCTGTGGCCTCTGTGGAAACTGGGCACTCAGCAGGGACAAAGTAGGAAAATACAATGAATCGCTGTGCATCCTGAGTGCGTATGACCAATGGAGAGGGGGGATGCAACATGGTTGGTATTGGCCTCCGATTGGTGAAAGCCAGTGGTGGGAGGGAGTCAATACAGGGAGCCATGAACTCAGTGAGTGGACGTTTGGTCACATCTCTCACATTCTGCAGGAGAAAAGAAACAGACATGATGAAAGTGATCCCATTCAGTACATACATTCTTTATGAGTGAACTCTATTTACTTTTacatcacatatacagtgccttcagaaagcattcagaccctttcacttcttccacattttgttacctcagccttattctaaaattgattaaataatttttttcagtcatcaatctacacaaaataccccatattgacTAAGCAAGAACAGAATCGTtccaaattaatttaaaataaaaataatgggaaTATGCTTtcgtattcagtactttgttgaagcaccgttggcagcgattacagcatagaatcttcttgggtattacgctacaCACTCGGCATACTTGTGtttggggactttctcccattcttctctgcagatcctctcaagctctgttaggttggatggggagagttgcggcacagctattttcaggtctgtccatAGATGTTCGAtccggttcaagtccgggctctggctgggccactcaaggacattcagagacgtgtcccaaagtcactcctgcgttgtcttggcttgtgcttagggtcgttgttctgttgtaaGGTGACCcatcgcccccagtctgaggtcctgagcgctctggagcaggttttcttcaaggatctctctgtgctccgttcatctttgcctcgatcctgactagtctcttagtccacgccgctgaaaaacatccccacagcatgatgctgccaccaccgtgcttgacTGTGCCGtaggtgccagatttcctccagacgtgacgcttggcaatcaggccaaagatttcaatcttggtttcatcagaccagagcatcttgtttctcatggtctgagagtcaatgggtgccttttgggaaactccaagtgggctgtcatgtgccttttactgaggagtggcttccatctggcaaatctaccgtaaaggcctgattggtgaagtgctgcagagatggttgtccttctggaaggttctcctatctccacagaggaactcttgtgCTCTGTCAGtcactatcgggttcttggtcacctccccgactaAGACCCTTCTCCTCCGAATGCTCAGCTTGccgggcgtccagctctaggaagagtcttggtggttccaaacttcttctatttaagaatgatggaggtcactgtgttcttggggaccttcaatgctgcggacATCTgtttctcgacacaatcctgtctcggagctctacggacaatcccTTCTACCTCATGGTTTGGTATTTGATCTGGCATGCACTgtccactgtgggaccttatatagacaggtgtgtgcctttccaaatcatgtcatatCAATTTCATTTACAAcaagtccaatcaagttgtagaaacatcgaaaggacgatcaatggaaacaggatgcacctgagctcaatttcgagactcatagcaaagggtctgtatacttatgtaaataaagtatttctgtttttaaatgtaatacatttt

Function

NR:

description
inner centromere protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1745534 True 5328 TUCP 0.45 2 19143985 19164126
Loading

Neighbor

gene id symbol gene type direction distance location
crlf1a LOC106575381 coding downstream 228297 18909006 ~ 18915688 (-)
LOC110497081 NA coding downstream 236027 18905515 ~ 18907958 (-)
LOC110495741 LOC106574501 coding downstream 241631 18898437 ~ 18902354 (-)
LOC110495739 LOC106575386 coding downstream 247707 18891721 ~ 18896278 (-)
LOC110495742 thegl coding downstream 257765 18882965 ~ 18904709 (-)
acvr1l LOC106574510 coding upstream 23281 19187407 ~ 19200059 (-)
LOC110495751 LOC106574518 coding upstream 158530 19322656 ~ 19384501 (-)
LOC118936284 LOC106574517 coding upstream 189750 19353876 ~ 19373333 (-)
LOC110495759 LOC106586086 coding upstream 310183 19474309 ~ 19475867 (-)
LOC110495761 LOC106574524 coding upstream 324935 19489061 ~ 19495122 (-)
G1524454 NA non-coding downstream 3884 19098452 ~ 19140101 (-)
G1524443 NA non-coding downstream 19445 19068654 ~ 19124540 (-)
G1524441 NA non-coding downstream 91516 19051933 ~ 19052469 (-)
G1524440 NA non-coding downstream 92160 19051065 ~ 19051825 (-)
G1524431 NA non-coding downstream 115793 19027094 ~ 19028192 (-)
G1524502 NA non-coding upstream 42103 19206229 ~ 19206601 (-)
G1524504 NA non-coding upstream 46389 19210515 ~ 19211580 (-)
G1524516 NA non-coding upstream 72315 19236441 ~ 19236658 (-)
G1524506 NA non-coding upstream 117668 19281794 ~ 19286226 (-)
G1524537 NA non-coding upstream 128219 19292345 ~ 19292724 (-)
G1524311 NA other downstream 394590 18749125 ~ 18749395 (-)
G1523241 NA other downstream 576738 18561906 ~ 18567247 (-)
G1523234 NA other downstream 602274 18541145 ~ 18541711 (-)
ghs-r ghsr other downstream 697424 18445083 ~ 18447303 (-)
G1523149 fndc3b other downstream 707933 18432093 ~ 18436052 (-)
LOC110495764 LOC106574529 other upstream 409502 19573628 ~ 19577133 (-)
G1524755 LOC106581475 other upstream 558619 19722745 ~ 19730068 (-)
LOC110497093 LOC106574562 other upstream 1406970 20558557 ~ 20595753 (-)
G1527230 NA other upstream 3097930 22262056 ~ 22262462 (-)
G1528018 NA other upstream 3707919 22872045 ~ 22885833 (-)

Expression

G1524473(LOC106574589) Expression in all Baseline Samples

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G1524473(LOC106574589) Expression in each Bioproject

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G1524473(LOC106574589) Expression in each Sample
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Co-expression Network