G1524545 (LOC106574515)


Basic Information

Item Value
gene id G1524545
gene name LOC106574515
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19315112 ~ 19316506 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1745614
TTCAACCACAACAACGGAGAATAGAAAGGTGTCTGCCTATCGACAGAGGTTAGGGTTCGAGGTCAGGGTTGGCCATGACGACAGAgtcagacattagggttagaAGTCAGAGGTGACTCACCAGGTTGGCCATGACGATGGTGTCGACGATGACAGGGTCGGAGGGGGTTCCCAGGGTGAACTGGAGTCCTCTGGGGGGCTGACCTGTACTCACGTCAAAACAGTGACCCTCCAGCAGCAGATGTTCCAACTCGTATTCTGCTGCTACTATACTGTCCACctcttcCAGGTAGATATTGTCCAGGTCATATCTAGTGCGTATAGACTCCACCATCCAGCTCTCAGGGGTGTTGAGGTTGAGTGTGAAGAGGGGAGTTTGAGGCATGTCCAGGAACTtagccaggggaccaggggagaAACTACCATCAGTCTGGAACAACACCTCAGGCTCCAACACATACCGGTAGAAaCTTTTGAGAGGCAGGTCTGAGAGTTTGGACTGGCAGTTCATAAACACACGCAGGTTCACATTGACCAGCTTCTTCAACACCAATAGGAGCGGGGCTAGTTTCTGGGCGTCCCTGGTTACGGGGTCTACCACGGCAACCATGTCAAAGTAGACTTCTCCCTCTGTGGGCCGGATCTTTACAGCACTATCGGTCATCAGCAAAGGCATGTTCTATCCTGGCCTCTCCTTTGGgctgagaggagagcagagagtcaATCTTCATCACCAGGTCACTGGCCCGGTCTTCCTCCACCCCAAACTGCTGGACCTTGCTTTTGATTCGCTCTCCCGAGGTCTTCAAAATGATACTCTCCAATAGGAGGAAGTCATCTTGGTTAAAGACCTCCCCTTCCTCTAGT

Function

NR:

description
UDP-glucose:glycoprotein glucosyltransferase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1745614 True 867 lncRNA 0.52 5 19315112 19316506

Neighbor

gene id symbol gene type direction distance location
acvr1l LOC106574510 coding downstream 115053 19187407 ~ 19200059 (-)
crlf1a LOC106575381 coding downstream 399424 18909006 ~ 18915688 (-)
LOC110497081 NA coding downstream 407154 18905515 ~ 18907958 (-)
LOC110495741 LOC106574501 coding downstream 412758 18898437 ~ 18902354 (-)
LOC110495739 LOC106575386 coding downstream 418834 18891721 ~ 18896278 (-)
LOC110495751 LOC106574518 coding upstream 6150 19322656 ~ 19384501 (-)
LOC118936284 LOC106574517 coding upstream 37370 19353876 ~ 19373333 (-)
LOC110495759 LOC106586086 coding upstream 157803 19474309 ~ 19475867 (-)
LOC110495761 LOC106574524 coding upstream 172555 19489061 ~ 19495122 (-)
LOC110495762 LOC106574525 coding upstream 178820 19495326 ~ 19502053 (-)
G1524541 LOC106574515 non-coding downstream 16649 19295613 ~ 19298463 (-)
G1524537 NA non-coding downstream 22388 19292345 ~ 19292724 (-)
G1524506 NA non-coding downstream 28886 19281794 ~ 19286226 (-)
G1524516 NA non-coding downstream 78454 19236441 ~ 19236658 (-)
G1524504 NA non-coding downstream 103532 19210515 ~ 19211580 (-)
G1524548 NA non-coding upstream 5327 19321833 ~ 19322036 (-)
G1524598 NA non-coding upstream 80825 19397331 ~ 19397802 (-)
G1524679 NA non-coding upstream 254237 19570743 ~ 19572529 (-)
G1524702 NA non-coding upstream 350604 19667110 ~ 19669050 (-)
G1524473 LOC106574589 other downstream 150986 19143985 ~ 19164126 (-)
G1524311 NA other downstream 565717 18749125 ~ 18749395 (-)
G1523241 NA other downstream 747865 18561906 ~ 18567247 (-)
G1523234 NA other downstream 773401 18541145 ~ 18541711 (-)
ghs-r ghsr other downstream 868551 18445083 ~ 18447303 (-)
LOC110495764 LOC106574529 other upstream 257122 19573628 ~ 19577133 (-)
G1524755 LOC106581475 other upstream 406239 19722745 ~ 19730068 (-)
LOC110497093 LOC106574562 other upstream 1254590 20558557 ~ 20595753 (-)
G1527230 NA other upstream 2945550 22262056 ~ 22262462 (-)
G1528018 NA other upstream 3555539 22872045 ~ 22885833 (-)

Expression


Co-expression Network