G1523753 (LOC106574529)


Basic Information

Item Value
gene id G1523753
gene name LOC106574529
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19574198 ~ 19577096 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1744733
TATATCACACTTTTAAAGGAGGAGCCGTGACAAGGAGTCTGAGTACCAAACTATATTTATTGTTTACAGTAGTAAAAGACGCCAAACAATGTACAAATCAGTAGAGAAACCAAACAAATACCATATGACAAAACATGTGGGTAAAGAACTTAACTGCCCCTCCCCTTATGCTCCAAGTAGACGTAGCCCCtaaccacagacctaggatcagaaAACCAGAACCCCCAAAACATTAACCAGTCCGGGGATGCAAAtgatctgaccctgtatcagtgtTCAAGGATGACTTCTCCCTCCTGCCTTACACCCCCACCCAAACACCGAAAGCAGAGTCACTGACAGGGCTGCTGTATGAACTGACCActgaaaaaagaaagaaatggcCCCATATGGTATCAGGGAATATTCCCGTTTGACTGCCCTAAAAAACTAGGGGTGCATCTCAACAGTATAAGTAGCTTCCTTGAGACAAGGGTTCTCCTCGTAAAACTGACACTAAAGAACTGGACATGTGAAAGCATATTCCATGGTCAGCATCCACCTTAGCCTGAATGTTCAGATCGGTGCCAAATTAAGGAGAGGGAACATAAGACTTGAGATGCACCCTTGGAAAAACCAGGGCGTCCCCCATGTCAAACCATTGGAAGGGTCCAGAAGCCACCCCCTAACACCTAGGCACTTCGTGTAGATTTAAGGTGTTGGATAAATACAAAACACTACACGTGGCTTAGGTGTAGGGGGTTGTTTCTAGATCAAAACTCATGATTCTTAACATTGGAAAGACCCAGAAGCTGTCCAAGACAGTTCAAGAGTTCAATGTTGACTAAGACAGACATTTGAAGGGAGCCCTCCCCCCACCCCATCCAAAAACGCACCAGACATCTTTTAAAATAAGATCAAGGAAACAGACGATGGGGAAGCCTCAAAATAGAAGTTGCCCcttaccacagatctaggatcagctcatcGTGTCCTAAACCTAACCTCATCCAATATGGGGTAAACTAATAACTGACCTTAAATCAGTGTCTAGGGGGCAAATTCATCCCAATCCTACACCCCAGGACAAAACTgagacaaacatttttttttaaaacaacaaaGGAACACAGAAGCTGAagtgactggaggagaggagcagtgGGCGTGGTTTGGGTATGTCAATCACTGTAACAGGAGGGGCTTAGCAGAGACCACCTGTCTGCTGTTGGAAAACATCTATGGTGTCTTCATCCTCCATCTCCAGCTGTGAAGGTGTGTCTGTCTCGTTGATTGGCTGTCCGTCAAACCTGAACCTGATCTGCCTTATCGAGAGCCCCTGACGTTCGCAGTAGGCCTTCATCAGTTTGCTGAGCGGAGTGTGTCTCTTGATTTTGAACTGAACCACAGAGCCGTCCTGACCGGCTACCTTTAAGTTAATGTGGTCGTTCTCAGTCTTCACGCCctcCTTTGGTTTCTCCTCCGACATTTTGGTGGGTTTTCTTTAAAGGATTTGCGGGTTAAAATGTAATTTTGACTGTGTTTTCGTTTGCACCTCTTTAAGCTATATGCTCTTCTCCTCCGCAAAC
>TU1744734
TATATCACACTTTTAAAGGAGGAGCCGTGACAAGGAGTCTGAGTACCAAACTATATTTATTGTTTACAGTAGTAAAAGACGCCAAACAATGTACAAATCAGTAGAGAAACCAAACAAATACCATATGACAAAACATGTGGGTAAAGAACTTAACTGCCCCTCCCCTTATGCTCCAAGTAGACGTAGCCCCtaaccacagacctaggatcagaaAACCAGAACCCCCAAAACATTAACCAGTCCGGGGATGCAAAtgatctgaccctgtatcagtgtTCAAGGATGACTTCTCCCTCCTGCCTTACACCCCCACCCAAACACCGAAAGCAGAGTCACTGACAGGGCTGCTGTATGAACTGACCActgaaaaaagaaagaaatggcCCCATATGGTATCAGGGAATATTCCCGTTTGACTGCCCTAAAAAACTAGGGGTGCATCTCAACAGTATAAGTAGCTTCCTTGAGACAAGGGTTCTCCTCGTAAAACTGACACTAAAGAACTGGACATGTGAAAGCATATTCCATGGTCAGCATCCACCTTAGCCTGAATGTTCAGATCGGTGCCAAATTAAGGAGAGGGAACATAAGACTTGAGATGCACCCTTGGAAAAACCAGGGCGTCCCCCATGTCAAACCATTGGAAGGGTCCAGAAGCCACCCCCTAACACCTAGGCACTTCGTGTAGATTTAAGGTGTTGGATAAATACAAAACACTACACGTGGCTTAGGTGTAGGGGGTTGTTTCTAGATCAAAACTCATGATTCTTAACATTGGAAAGACCCAGAAGCTGTCCAAGACAGTTCAAGAGTTCAATGTTGACTAAGACAGACATTTGAAGGGAGCCCTCCCCCCACCCCATCCAAAAACGCACCAGACATCTTTTAAAATAAGATCAAGGAAACAGACGATGGGGAAGCCTCAAAATAGAATGTGCCCCCTGCTCCAGTCTTCGCCATTGAGGCGGCAGGTAGGAGGGCAAGGTGTCTGATTGGCGACTGTGCTGACCTGACGTTCGCAGTAGGCCTTCATCAGTTTGCTGAGCGGAGTGTGTCTCTTGATTTTGAACTGAACCACAGAGCCGTCCTGACCGGCTACCTTTAAGTTAATGTGGTCGTTCTCAGTCTTCACGCCctcctgaaacacaaccaaacagCAATGAAAGGattaacattgtagttattcagTCTTCAATACACCTGTCTTGGAGAGCCAAACAATTGACTTGTACAACCACTGTTAAGACTCCTCACGTCTCTGGACGGTGTAGCAAGGTAGTGTTCTTGTCTGTAAAATTAGAGTTGCCTGCGGGTGGTACTGGGTCTGGGAAATGTGCGAAACCCGAAGGCTGTGACTGAAGCAGCCAGCTACTAGACCCAGGCGTTATCCGTAGCAAAACCCACGTTCCGCTTTTCCTAGTACCTCAAATCAAGAGAAAATATATGAATCCTGTATCAATCAGTGGTTAGGGACTATTTCGTGCAGACGAGATATGAACAAGCTAGCTAATTCTGGTCTTACCGGCGCCTGGCCAACGCCATGCGTGTTTACTGGCCTAGAAGATACAAACAGTGCGTTAACTAACTAATTATGTTATTTATCCATTTCAATAAGTGGATGCCGACGAATGCATCCAAATCACTCGAATATGGCTTCCAAATTGTGTCACATTTTGTGCCGCTACTATTGCGGCATTTAGCTAGCCAGCTGCTAGCGTGGTCTTTtttccacaaagaaaaacccGCTAACGCTATCCGTGTATTCAACTTCGAAATGTAAGTGGTATTTGTTTCAACAATTCTATTTTCTGGTTGAAATACTTCGCACAACATCTCCAATAGCTTGTATATCTGATCAACTTAGAAATATCGTATCCGGAGGCAGCACTCCATTCATTTAACTACGAAACAAACAGTGCGCCGATTCAGACAAACGTGCAAACCGGGCCATTTTTGATTGCATATTTCAGGCGCTATTCAGCATTAGACTGTTTCAATCACCTTAAATAGCCATCACATGTTGATAGCCGACTAGCCTTACCTTTGGTTTCTCCTCCGACATTTTGGTGGGTTTTCTTTAAAGGATTTGCGGGTTAAAATGTAATTTTGACTGTGTTTTCGTTTGCACCTCTTTAAGCTATATGCTCTTCTCCTCCGCAAAC

Function

NR:

description
PREDICTED: small ubiquitin-related modifier 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1744733 False 1568 lncRNA 0.45 4 19574198 19577096
TU1744734 True 2162 lncRNA 0.44 2 19574198 19577096

Neighbor

gene id symbol gene type direction distance location
zgc:112416 cssa16h21orf58 coding upstream 27618 19544144 ~ 19546580 (+)
LOC110495758 LOC106575368 coding upstream 103512 19462849 ~ 19470686 (+)
LOC118941117 LOC106574523 coding upstream 113277 19458772 ~ 19460921 (+)
LOC110495755 LOC106574522 coding upstream 129765 19436699 ~ 19444433 (+)
LOC110495754 ola1 coding upstream 139342 19424249 ~ 19434856 (+)
LOC110495766 LOC106574532 coding downstream 78120 19655216 ~ 19669147 (+)
trnak-uuu-124 NA coding downstream 95078 19672174 ~ 19672246 (+)
trnak-uuu-125 NA coding downstream 96208 19673304 ~ 19673376 (+)
trnak-cuu-73 NA coding downstream 99185 19676281 ~ 19676353 (+)
trnan-guu-15 NA coding downstream 100014 19677110 ~ 19677183 (+)
G1523735 LOC106574527 non-coding upstream 25420 19548396 ~ 19548778 (+)
G1523734 NA non-coding upstream 26238 19546597 ~ 19547960 (+)
G1523728 NA non-coding upstream 41194 19531915 ~ 19533004 (+)
G1523726 LOC106574571 non-coding upstream 43547 19530252 ~ 19530651 (+)
G1523637 NA non-coding upstream 150039 19384228 ~ 19424159 (+)
G1523763 LOC106574531 non-coding downstream 16245 19593341 ~ 19593891 (+)
G1523765 LOC106575406 non-coding downstream 19540 19596636 ~ 19600290 (+)
G1523783 NA non-coding downstream 53842 19630938 ~ 19631515 (+)
G1523871 NA non-coding downstream 271103 19848199 ~ 19848838 (+)
G1523894 NA non-coding downstream 278630 19855726 ~ 19856055 (+)
G1523703 LOC106575364 other upstream 66942 19506392 ~ 19507256 (+)
G1523614 NA other upstream 195726 19377067 ~ 19378472 (+)
otomp omp-1 other upstream 366964 19206164 ~ 19211574 (+)
G1523542 NA other upstream 372109 19201027 ~ 19202188 (+)
LOC110495769 LOC106575326 other downstream 173636 19748427 ~ 19761242 (+)
G1523847 NA other downstream 197996 19775092 ~ 19827966 (+)
LOC110495771 LOC106574539 other downstream 319964 19897030 ~ 19900020 (+)
LOC110495777 LOC106574545 other downstream 415744 19992559 ~ 20049054 (+)
LOC110495776 LOC106574545 other downstream 489158 20065965 ~ 20110618 (+)

Expression


Co-expression Network