G1524769


Basic Information

Item Value
gene id G1524769
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19742789 ~ 19745279 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1745868
AATTACTTAGGATTTTATTCAATGGAAAAAAGACCTTGAGGAAAATACAATAATTCCCATAATACACAGAGGGCATAAATTAGAGTAGCATGGTAGAAACACTTGTCACCTGGCACCTGGGCAGCAGAGAACCATGTCACAACGTTGCCACAGCCAAGGGCACACTGCTGTGTTATCCAGGAAAATCAGTGATTTAAACTCAGAATCTTGTCATTTTTGAAAAGTGAATGAACAGAGGTTGAGGGTCATTCCTGTACATGAACCTCCAAATGAtacaaaagcaaaaaaaaaaaaaaaaaaagtgagaaTTGccttaaaacaaaaacataaatattATATTGATGCACATTGGTTTAACAAAACATTGCCTCTGTAAACACTTTCAACATAAATGCGTGCATTAATCTAAAAACCACTGCAGTCACATAATTATAAGGGTAATAAAAATGACAGAAACAAACTAAATCTAGGAGTTAAAAATGTTAGCGATACTTTCTGTAGTGGTTTGTAACACTGTTAAAATGTGTGACTTGTGCCGTCTTGGCATGGCACCGCGTTTCACAGATTTGCAGAGGAAAAAAGCATCTCATTTCTATATTCTTACAGGCCTCTTTAGAGGATGTGACAGTCCACTACAGTGGGTCAAGCTTTGGAGGGACATGTAACCCTAGAGACATTAGGATTtccattctttaaaaaaaaaaacgtgtgtCCATACAAACAATCTAACTGTGGTGCCAGTCTATGTCAGAAGACCAGGACAGTGGAGCTCCTTGCTGTTGCttcagactggtacccaggctaaccAGGAAACATTAGGACAAACAAGTGGCGTCCGATTTTTCACTAGTTGGATCAAGAGACGAGAggtaaacaaaataaataacacCAGGAGCTGCAGGGGTTTGGAAAAGCTTCCAGGTTGTTGTCGTGTTGCTTTAATCCACAGCGTACTACTGCCTGGACTGGGACAGACTGTACAAAACAAAAAATGTCCCCTTCTGCCCTCAGAGTCAAGATACTAAAATAATGCAGACAAGCTGAGGGGGTGAAGCTACCCGACTATGTTTAGTCTGTTGGTATTAAAATAGGCCAACATCGATTTACAACGATTTCACAAACGTATCAAAATGGGGACCATGCTGCTTTATAATAGTTTTTACAGTTAATAATTCAATCGCACTCAAAATGTCAGATTTTGATACATTTCCTGTAGGACTTCTGAGCAAAACCTAAAGCATTTGTCACAACAGATTGTACAAGTAGCCACAAACGTAAACCTGAATTCAGTGGAGGGGCCCAttaaaatgaaaaacaaacaaatcGAAAGCTGTGGTTGCTGATACATTTGGATATGTTGTGGATTTTAATGCTTCATCTACAAATCCTTAAGGTATATTTAATCTTGACACTTCTTCCATTGAATATCCTGGTCATCATGCTACCAAATGGTGGGTCAAAGTCACAACTCATGACCAAGACCGTTCACTAGAGTCTACTGTACATATCAACCCATTCACAGTTTGCCCAACATGACCAAGGAGAGGCAATGTGGCATGTTAAAGTTGAGGGAGGCTGGAAAAGACCCTCAGGAGTATATGGGACTGGAAAGGCCCCTATAAGGTTGCAGTGTCCTATTAAGGGTTAAGTCGACATCTTTGATGAAACTTCTCTCCACACTTTAACCCTGTTTGAACCTTTATCAAGAGGAAGGCCGGAGTGAAAAAGTCAAGCACGACCCATTTGAAAATGGACCCATGTGGTGGCAACGGCATGTCAGTCAGAGGAACTGATCTAAGAAACACTCAACACAGAGGTTGACCTGAACATGACCTGGACTAAACACAATAACAAACTACTGTATGACCTTTCACCTGTCTGGTGCTATAAGGTCCCCTTTGTTATTTTCCTCCCTTTCCATCCtctgtcacacatacacataagCCCCTCACTCTTCTTCCAATAGAGAGACATTAACATCTACCAGTGTTTTGAATAAGTCGGGCTCAGATCCCTACTCCCACTGGTGTAGGAGATAAGGGGAGGCTCTAGTAGGGTTTGGGGGCGAGAACCCAGAAAAGCTGATGACGTCTGTTGTCAGAGCAGAGTGGCCAATGGGCATGATGACAGCACTACCAactgacaaacaaacacagtCCCATCAGCCTATAGGGACCCCGTGGCCTCCCCTTCATGATTTCAGTTTGTTTATCGTGCAATTGTCTTTTCTTATTTGAAACCGGTGATATTTAGGTATCGCGCCGCCTCAGAGCTCAGTGAAGCTCGCTACTCCAGTTGTACGTCAAGCTCAAGATAAATCATTGTCATGAATCATCATTATGGTGGTAATAAACCGAGGGGTGCTGTCTTCATGctgctgggtgtgtgtgtacactaccaGCTAAGCAGGGAGGTACGGCCCAGGGTCATGAAGTAGACCTGGCTGGAACCTCCAGAGCGCACCGACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1745868 True 2468 lncRNA 0.42 2 19742789 19745279

Neighbor

gene id symbol gene type direction distance location
trnan-guu-14 NA coding downstream 66057 19676659 ~ 19676732 (-)
LOC110497086 LOC106574531 coding downstream 94038 19584834 ~ 19648751 (-)
LOC110495765 NA coding downstream 161555 19578492 ~ 19581234 (-)
LOC110495764 LOC106574529 coding downstream 165656 19573628 ~ 19577133 (-)
LOC110497085 LOC106574572 coding downstream 172094 19562014 ~ 19570695 (-)
LOC110495768 LOC106574536 coding upstream 17195 19762474 ~ 19793454 (-)
LOC118941046 LOC103370040 coding upstream 114925 19860204 ~ 19864234 (-)
LOC110495773 casq1 coding upstream 214201 19959480 ~ 19967828 (-)
LOC110497091 LOC106574544 coding upstream 305161 20050440 ~ 20058151 (-)
LOC110495778 LOC106575314 coding upstream 368027 20113306 ~ 20140842 (-)
G1524746 NA non-coding downstream 34635 19707684 ~ 19708154 (-)
G1524702 NA non-coding downstream 73739 19667110 ~ 19669050 (-)
G1524679 NA non-coding downstream 170260 19570743 ~ 19572529 (-)
G1524598 NA non-coding downstream 344987 19397331 ~ 19397802 (-)
LOC110495751 LOC106574518 non-coding downstream 364683 19322656 ~ 19384501 (-)
G1524791 NA non-coding upstream 103090 19848369 ~ 19848839 (-)
G1524820 NA non-coding upstream 105795 19851074 ~ 19851287 (-)
G1524823 NA non-coding upstream 108081 19853360 ~ 19853658 (-)
G1524824 NA non-coding upstream 108641 19853920 ~ 19854200 (-)
G1524831 NA non-coding upstream 120373 19865652 ~ 19865916 (-)
G1524755 LOC106581475 other downstream 12721 19722745 ~ 19730068 (-)
G1524473 LOC106574589 other downstream 578663 19143985 ~ 19164126 (-)
G1524311 NA other downstream 993394 18749125 ~ 18749395 (-)
G1523241 NA other downstream 1175542 18561906 ~ 18567247 (-)
LOC110497093 LOC106574562 other upstream 825817 20558557 ~ 20595753 (-)
G1527230 NA other upstream 2516777 22262056 ~ 22262462 (-)
G1528018 NA other upstream 3126766 22872045 ~ 22885833 (-)
LOC110495841 LOC106574435 other upstream 3414279 23008547 ~ 23168591 (-)
LOC110495851 LOC106574449 other upstream 3736261 23479558 ~ 23541681 (-)

Expression


Co-expression Network