G1523871


Basic Information

Item Value
gene id G1523871
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19848199 ~ 19848838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1744871
cttctaaaatgtgagatttgggttttcataaggttagggctctgctcaatcagtggcccgcccctgtgaagggacatggtcTATAAatcttttcaaacacgcccttctctcccttcctatataaatccttgacgacaatgtaacctcctgttccgaggacgacggtccgatgtcagaatggtccagataataactacagaacgaagccaacatcagcatgagctttggttgcgattGGTATggactttgaactcttattcactacagaagtgatacctcctagccgttgagttagcaacagccgctgcaaacgagggttaggaaggaacagacagactatcccgtctaccacacaacgacgttataCAAcatattcaatttaccagcagagatattcttcaaaggacaaaggactcggttgggcaacacggccttccatctaccaccaacctaccgaaactcagagtaaatatttattgcattttccttttccaaatgggcggtcatttagaatgcataagatactgtatttacgatagcacagcttcgcccctTTGTTCCTCactcttcccgctctttcactctaacccagcc
>TU1744872
tgtcagaatggtccagataataactacagaacgaagccaacatcagcatgagctttggttgcgattGGTATggactttgaactcttattcactacagaagtgatacctcctagccgttgagttagcaacagccgctgcaaacgagggttaggaaggaacagacagactatcccgtctaccacacaacgacgttataCAAcatattcaatttaccagcagagatattcttcaaaggacaaaggactcggttgggcaacacggccttccatctaccaccaacctaccgaaactcagagtaaatatttattgcattttccttttccaaatgggcggtcatttagaatgcataagatactgtatttacgatagcacagcttcgcccctTTGTTCCTCactcttcccgctctttcactctaacccagcccttttctttgtgtaacaagctgtcatatctgttccgcccgctaggg

Function

NR:

description
uncharacterized protein LOC110518344

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1744871 False 594 lncRNA 0.45 1 19848199 19848792
TU1744872 True 470 lncRNA 0.45 1 19848369 19848838

Neighbor

gene id symbol gene type direction distance location
tlr22 tlr22 coding upstream 355 19844336 ~ 19847844 (+)
LOC110495770 LOC100136121 coding upstream 11320 19832923 ~ 19836879 (+)
LOC118941119 LOC100136121 coding upstream 28093 19816649 ~ 19820106 (+)
LOC118941067 LOC106593417 coding upstream 35194 19812002 ~ 19813005 (+)
LOC118941120 LOC100136121 coding upstream 40228 19804510 ~ 19807971 (+)
LOC110495771 LOC106574539 coding downstream 48192 19897030 ~ 19900020 (+)
LOC110495772 LOC106574540 coding downstream 59765 19908603 ~ 19954099 (+)
poglut1 poglut1 coding downstream 120670 19969508 ~ 19975011 (+)
timmdc1 cc001 coding downstream 126176 19975014 ~ 19982950 (+)
LOC110495777 LOC106574545 coding downstream 143721 19992559 ~ 20049054 (+)
G1523783 NA non-coding upstream 216684 19630938 ~ 19631515 (+)
G1523765 LOC106575406 non-coding upstream 247909 19596636 ~ 19600290 (+)
G1523763 LOC106574531 non-coding upstream 254308 19593341 ~ 19593891 (+)
G1523753 LOC106574529 non-coding upstream 271103 19574198 ~ 19577096 (+)
G1523735 LOC106574527 non-coding upstream 299421 19548396 ~ 19548778 (+)
G1523894 NA non-coding downstream 6888 19855726 ~ 19856055 (+)
G1523896 NA non-coding downstream 9268 19858106 ~ 19858708 (+)
G1523959 NA non-coding downstream 134387 19983225 ~ 19983481 (+)
G1523962 NA non-coding downstream 136884 19985722 ~ 19986153 (+)
G1523847 NA other upstream 20233 19775092 ~ 19827966 (+)
LOC110495769 LOC106575326 other upstream 87179 19748427 ~ 19761242 (+)
G1523703 LOC106575364 other upstream 340943 19506392 ~ 19507256 (+)
LOC110495755 LOC106574522 other upstream 403890 19436699 ~ 19444433 (+)
G1523614 NA other upstream 469727 19377067 ~ 19378472 (+)
LOC110495776 LOC106574545 other downstream 217416 20065965 ~ 20110618 (+)
LOC110495784 LOC106574551 other downstream 357654 20206484 ~ 20236753 (+)
G1524124 LOC106574554 other downstream 456867 20305705 ~ 20306904 (+)

Expression


Co-expression Network