G1523959


Basic Information

Item Value
gene id G1523959
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19983225 ~ 19983481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1744961
GGTTAAGACACAGTCACATTGCCATTATGTTCAGATAATTGATCAAGCAACCGACTGCTAGGCAATTCCATAGTAATGATGCTGAGACttagatttttcactttaaaatgtatgccaaacaaaaaccaatgattgtaaagttaaacaaaccatataactctatgcacaaggacaacttttaacaatttccattgaacattttacaaaaacatttctttgaagaacagtgcaaatgcaaagtttggtaacaggaggac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1744961 True 257 lncRNA 0.33 1 19983225 19983481

Neighbor

gene id symbol gene type direction distance location
timmdc1 cc001 coding upstream 275 19975014 ~ 19982950 (+)
poglut1 poglut1 coding upstream 8214 19969508 ~ 19975011 (+)
LOC110495772 LOC106574540 coding upstream 29126 19908603 ~ 19954099 (+)
LOC110495771 LOC106574539 coding upstream 83205 19897030 ~ 19900020 (+)
tlr22 tlr22 coding upstream 135381 19844336 ~ 19847844 (+)
LOC110495777 LOC106574545 coding downstream 9078 19992559 ~ 20049054 (+)
LOC110495776 LOC106574545 coding downstream 82484 20065965 ~ 20110618 (+)
LOC110495779 LOC106575341 coding downstream 179304 20162785 ~ 20164464 (+)
si:busm1-52i16.2 LOC106574552 coding downstream 183752 20167233 ~ 20170345 (+)
LOC110495784 LOC106574551 coding downstream 223003 20206484 ~ 20236753 (+)
G1523896 NA non-coding upstream 124517 19858106 ~ 19858708 (+)
G1523894 NA non-coding upstream 127170 19855726 ~ 19856055 (+)
G1523871 NA non-coding upstream 134387 19848199 ~ 19848838 (+)
G1523783 NA non-coding upstream 351710 19630938 ~ 19631515 (+)
G1523962 NA non-coding downstream 2241 19985722 ~ 19986153 (+)
G1523994 NA non-coding downstream 66421 20049902 ~ 20104851 (+)
G1523997 LOC106575314 non-coding downstream 69288 20052769 ~ 20118213 (+)
G1524032 NA non-coding downstream 140367 20123848 ~ 20124587 (+)
G1524034 LOC106575314 non-coding downstream 141587 20125068 ~ 20126928 (+)
G1523847 NA other upstream 155259 19775092 ~ 19827966 (+)
LOC110495769 LOC106575326 other upstream 222205 19748427 ~ 19761242 (+)
G1523703 LOC106575364 other upstream 475969 19506392 ~ 19507256 (+)
LOC110495755 LOC106574522 other upstream 538916 19436699 ~ 19444433 (+)
G1524124 LOC106574554 other downstream 322224 20305705 ~ 20306904 (+)
G1524181 LOC106574559 other downstream 489879 20473360 ~ 20483713 (+)

Expression


Co-expression Network