G1524985 (LOC106574545)



Basic Information


Item Value
gene id G1524985
gene name LOC106574545
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20103303 ~ 20104396 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1746113
atataattttatttgaatttgccacgctgcattttccctggcttttggccaagtgggacgcaagcgtcccctatccTAGAGAGGTTAAGGCATTGGTCAAAAGTGCACTACATACGGTGTGACATTTAAGCAATAATAATTCAACCTCTTACCATCTCTGAGGAATAGGCAGCCGAAGGCGGTGACAGTGACAAAGGCCGCACAGATTCCATCCAGTCGGAGAGCAAACCAGCGAGAAGTGACCAGGAACAGGAACCAGGACTCTGTGTGCAGATCCTGATAAGTGTCAAAGGTGTTCTGGAATCTCTCCTCGGCTCTGAAGGCTCGGATCGTCCACAGACCTTGGAGGGACGAGGACAGGTGGGAGAAGACGGGACTCCGAGCTGCAGAACACAGGAAATACATAAACTCACACACGCCTGCAGACACAAAAAGAAATCATACACATTAATAGAGCAAATGTACAATTATCCTTTGTCCCTTGCCTCCCCTCACTGTCCCAGTCAGTCCTGTCACTCACTGGTGGACTCCAGGCGTTTGACGTCTCGTGACGTCTGCAGGAAGTAGCGCCTCAGAAACAGGAATATGATAAGTAGAGGAACGACAGGAATGAGGATCCAGGGCATGACTGCCGCTGCCACCGCCACCACGCCAATATTCTGCAGGATCAACTGTGGAAAATGAGATACGCCCCCCTGACTGAAGTCAACAAAGGTAATAGGTAGCATGGAATCCAGCTGGCCAATGTCCTTAGAGAACCTGTTGAGAATTCTTCCTGTGGTAGAACAGGaggaaaaactggttgaatcaatgccgtttcccatgtcatttcaacaaaacAAATTCAATGTGGTGATGATtgatcaacgtggaaaactgattggatttttaaAAAGTCATCAACGTGCTAAGAATGCTATATTTGGATGACTATTCCCTATTGAAATTTGGTCTCTAGGTACTCTCTGTAAGGCCAGAGGTCACCATAAATC

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1746113 True 992 lncRNA 0.47 2 20103303 20104396

Neighbor


gene id symbol gene type direction distance location
LOC110497091 LOC106574544 coding downstream 45152 20050440 ~ 20058151 (-)
LOC110495773 casq1 coding downstream 135475 19959480 ~ 19967828 (-)
LOC118941046 LOC103370040 coding downstream 239069 19860204 ~ 19864234 (-)
LOC110495768 LOC106574536 coding downstream 309849 19762474 ~ 19793454 (-)
trnan-guu-14 NA coding downstream 426571 19676659 ~ 19676732 (-)
LOC110495778 LOC106575314 coding upstream 8910 20113306 ~ 20140842 (-)
LOC110495781 LOC106574547 coding upstream 74205 20178601 ~ 20192178 (-)
LOC110495785 LOC106574553 coding upstream 135516 20239912 ~ 20248333 (-)
LOC110495786 LOC106574549 coding upstream 146878 20251274 ~ 20255220 (-)
LOC110495787 LOC106574546 coding upstream 154771 20259167 ~ 20290820 (-)
G1524900 NA non-coding downstream 119081 19983643 ~ 19984222 (-)
G1524893 NA non-coding downstream 128388 19973135 ~ 19974915 (-)
G1524860 NA non-coding downstream 185547 19917375 ~ 19917756 (-)
G1524838 NA non-coding downstream 222440 19880614 ~ 19880863 (-)
G1525012 NA non-coding upstream 63250 20167646 ~ 20167871 (-)
G1525022 NA non-coding upstream 91413 20195809 ~ 20196014 (-)
G1525057 NA non-coding upstream 146011 20250407 ~ 20250654 (-)
G1525059 NA non-coding upstream 161771 20266167 ~ 20266455 (-)
G1525060 NA non-coding upstream 162851 20267247 ~ 20267735 (-)
G1524755 LOC106581475 other downstream 373235 19722745 ~ 19730068 (-)
LOC110495764 LOC106574529 other downstream 526203 19573628 ~ 19577133 (-)
G1524473 LOC106574589 other downstream 939177 19143985 ~ 19164126 (-)
G1524311 NA other downstream 1353908 18749125 ~ 18749395 (-)
G1523241 NA other downstream 1536056 18561906 ~ 18567247 (-)
LOC110497093 LOC106574562 other upstream 466700 20558557 ~ 20595753 (-)
G1527230 NA other upstream 2157660 22262056 ~ 22262462 (-)
G1528018 NA other upstream 2767649 22872045 ~ 22885833 (-)
LOC110495841 LOC106574435 other upstream 3055162 23008547 ~ 23168591 (-)
LOC110495851 LOC106574449 other upstream 3377144 23479558 ~ 23541681 (-)

Expression



Co-expression Network