G1524115 (LOC106574546)


Basic Information

Item Value
gene id G1524115
gene name LOC106574546
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20288225 ~ 20288788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1745148
AATCTCTTTGATGACCTTTTCCACGATGCCCCTGTCCTGAAGGTTATGGAGGTAGCGATTGGCTGGGGAGCTAGCCAGCCGGCGGAGCTGTGCCACGTTGGAGATGTCATTGGCCGCGGGCGTGATGCCCACCATGAAGAACTTCACACCCTGGTTTTTGGCGTCGACCACGGCGGAGAAGATGTCTGGGTTCCTGGGGTGGAGGATGCCGTCTGTCAGCAGTATGGCCACCCTGATGCTCCCTGGCTCTGACTCCTCCATGTAGATCTTGGTCAGGTTGGTGATGGCGTAGGTGGTGTAGGTGCCGTGGCCGATGTATCCGATGGGTGCGATGCGAGCCTTGAAGTTGGCCACCCCCCTCCACTGCTTGAAGGTCTGCTCGATGATCACATGGCTGCTGAACTGCAGGAGGGCGGCTCGCGAGCTGAGAGCCCGGCCCGTCTGGAGATTGACCCCCTGCAGGCGTTCAACCACATCTGTGGCGAACCTCTTCTCCTGGGCGTGGTTGTCCTTGGCGCTCTCCGAGCTGTCCACCAGGAAGGCCAGCTCCAGGCCACAGTCATC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1745148 True 564 lncRNA 0.60 1 20288225 20288788

Neighbor

gene id symbol gene type direction distance location
LOC110497092 NA coding upstream 42337 20244354 ~ 20245888 (+)
LOC110495784 LOC106574551 coding upstream 51472 20206484 ~ 20236753 (+)
si:busm1-52i16.2 LOC106574552 coding upstream 117880 20167233 ~ 20170345 (+)
LOC110495779 LOC106575341 coding upstream 123761 20162785 ~ 20164464 (+)
LOC110495776 LOC106574545 coding upstream 177607 20065965 ~ 20110618 (+)
LOC110495788 LOC106574550 coding downstream 7229 20296017 ~ 20302100 (+)
LOC110495791 LOC106575306 coding downstream 24749 20312098 ~ 20328610 (+)
LOC110495794 LOC106574560 coding downstream 238891 20527679 ~ 20552117 (+)
LOC110495795 LOC106574563 coding downstream 316098 20604886 ~ 20614129 (+)
LOC110495797 LOC106574564 coding downstream 374623 20663411 ~ 20696331 (+)
G1524101 NA non-coding upstream 20463 20267184 ~ 20267762 (+)
G1524100 LOC106574546 non-coding upstream 25511 20262130 ~ 20262714 (+)
G1524099 NA non-coding upstream 26567 20261431 ~ 20261658 (+)
G1524098 LOC106574546 non-coding upstream 27306 20260704 ~ 20260919 (+)
G1524097 NA non-coding upstream 28148 20259187 ~ 20260077 (+)
G1524117 NA non-coding downstream 1722 20290510 ~ 20290826 (+)
G1524122 NA non-coding downstream 15436 20304224 ~ 20304467 (+)
G1524124 LOC106574554 non-coding downstream 16917 20305705 ~ 20306904 (+)
G1524125 NA non-coding downstream 19699 20308487 ~ 20308953 (+)
LOC110495777 LOC106574545 other upstream 254580 19992559 ~ 20049054 (+)
LOC110495771 LOC106574539 other upstream 388206 19897030 ~ 19900020 (+)
G1523847 NA other upstream 460259 19775092 ~ 19827966 (+)
G1524181 LOC106574559 other downstream 184572 20473360 ~ 20483713 (+)
G1525320 NA other downstream 467903 20756691 ~ 20757412 (+)
LOC110497098 LOC106574424 other downstream 2310625 22599016 ~ 22641368 (+)
G1528194 NA other downstream 2870045 23158833 ~ 23161291 (+)

Expression


Co-expression Network