XLOC_003456 (ipo9)


Basic Information

Item Value
gene id XLOC_003456
gene name ipo9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24851671 ~ 24876621 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006767
GTGCATTGGCGCGCTGTGCATCCTTCCGTCGGCTCCCCGGTCATCTCTCCGTTAGCCTCGGCAAGACTGGCGAAAATATGGCGGGTATGAGCGCGTCGGGCCCCGGCCCGGTTTCGAGTCTCGACCAGGTGGATAAAGGATTGAAGGAGACTCTGATAGACGCGCTGAACGCCATTCTGTCCCCGGTGCAAGAAGTGCGAGCGGCGGCGGAGGAGCGCATTAAAGTGCTGGAAGTGACGGAGGAGTTTGGAGTTCACCTTGCAGAGCTCACAGTCGACCCACACGGAGCACTCGCTATTCGCCAATTGGCCTCTGTCATATTAAAGCAGTATGTCGAGACCCACTGGTGCGCCCAGTCAGAAAAATACAGGCCTCCAGAGACGACAGAATGGGCCAAAGCTGCGATCCGTGAGCTGTTGCCCAGTGGTTTGCGGGAGGCCATCAGTAAGGTACGCTCCAGCGTGGCCTACGCCCTTTCGGCTATTGCACACTGGGACTGGCCTGAAGCTTGGCCTGGGCTCTTCAAGCTCCTCATGGACATGCTGGCCAGTGGAGATGTCAATGCTGTACACGGCGCCATGAGAGTCCTGACGGAATTTACTCGAGAGGTGACCGATGTGCAGATGCCGGATGTTGCTCCTGTCATTTTGCCTCAGATGTACAAGATTTTTACCATGGCAGAGGTTTATAGTATTCGCACTCGATCCAGAGCAGTTGAGATCTTTACAACATGTGCCAATCTCATCTGTGCGATTGATGAAGTAGCAAAGGGTGCTGCCAACGCTCTGATTTTCCCTGTAGTCCAGCAGTTTACAGAAGCCTTTATACAGGCCCTGCAGATCCCAGATGGTCCAACTTCCGATAGTGGCCTGAAGATGGAAGTGCTAAAGGCAGTGACGGCATTGGTGAAGAACTTCCCCAAACCCATGGTGTCCTCAATGCAACAGATTCTTCCTATTGTGTGGAACACGCTGACAGAGAGTGCCTCTTTTTATGTGAGAACTGAGGTCAACTACACAGAAGAAGTGGATGATCCAGTTGACTCTGATGGTGAGGTCCTTGGCTTTGAAAACCTCGTCTTCAGCATCTTTGAGTTTGTCCACACACTCTTGGAGAACAAGAAGTTCAAGAGCACAGTGAAGAAAGCTTTACCGGAACTCATCTATTACATCATCCTCTACATGCAGATCACGGAGGATCAGATCAAGGTGTGGACGGCCAACCCACAGCAGTTTGTCGAGGATGAGGATGATGACACGTTCTCCTATTCGGTTCGGATATCAGCACAGGATCTGTTGCTGGCTGTTGCTGCTGAATTTCAGAACGAGAGTGCTGCAGCTTTAGCGGCAGCCGCAACACGACACCTTCAGGAGGCAGAGCAAGCCAAGAACACTGGCAGTGAACACTGGTGGAAGGTGCATGAAGCTTGCATGCTGGCGCTGGGATCAGTCAAAACCATCATCACAGAGAATGTAAAGAATGGTCGTGTGCAGTTCGATATGCATGGATTTCTTGCCAATGTCATCCTCGCGGACCTCAATTTACCTGCAGCCTCTCCGTTCCTGCTGGGTCGGGCCTTATGGGCAGCCAGTCGATTCACTGCAGCGATGTCTCCAGAGCTCATTCAGCAGTTCCTGCAGGCCACCGTGAGCGGGTTACACGAAAGCCAGCCACCCTCTGTTCGCATCTCTGCCGTCAGAGCTATCTGGGGTTACTGTGATCAGCTAAAGCTGTCAGAGAGCACTCACGTCCTCCAGCCATTCCTGCCCAGTGTTTTGGAAGGCCTGGTTCAGCTGGCGGCTCAGTTCAGCTCTGAAGTGCTCACGTTAGTCATGGAGACCCTCTGTATTGTTTGCACTGTGGATCCAGCTTTCACTACGAGTGCTGAGAACAAGATTTGCCCGCTCACCATTGCCATCTTCCTCAAGTACAGTAATGATCCTGTCGTAGCATCTTTAGCGCAGGACATCTTTAAGGAGCTTGCCCAGATTGAAGCCTGCCAAGGACCCATGCAAATGCGCCTCATTCCTACTCTCGTTAGCATTATGCAAGCGCCGCCTGATAAAATCCCTTCAGGACTTTGTGCTACTTCCATAGATATCTTAACTACAGTTGTTCGCAACACTAAACCTCCGCTCTCCGACATGTTGGTGTGCCAAGCTTTTCCAGCAGTGGCTCAATGTACCCTCCGCACAGATGACAACACCACAATGCAGAATGGCGGTGAGTGCTTGCGGGCCTATGTGTCTGTGGCGCTGGAGCAGATCGCCCGATGGCAGGATGAGCAAGGTCACAGTGGGCTGTGGTATGTCATGCAGGTTGTCAGTCAGCTCCTGGACCCCCGCACATCTGAGTTCACCGCTGCTTTTGTGGGTCGTTTGGTGTCCACTCTTATTACCCGAGCTGGCACTCAGTTGGCTGACCAGCTGGACCAAATACTGCGTGCTATTCTCAGCAAGATGCAGCAGGCTGAGACACTCAGTGTGATGcagtcCCTGATTATGGTTTTCGCCCACCTGGTCCATTCCCAGTTGGAGCCCCTGCTGGAATTCCTATGCAGTCTTCCAGGTCCCACAGGGAAACCGGCCCTGGAGTTTGTCATGGCTGAGTGGATGAGTCGCCAGCATCTGTTCTACGGCCAGTATGAAGGCAAAGTCAGTGCTGTCGCCTTGTGTAAACTTCTCCAGCACGGTCTGAATACAAATGACAAGCGCCTCCAAGATATAGTCGTCAAAGGAGATGAAATTTTTAATCCAGACGAGGGAATTTGCACACGTTCCAAATCAGCCAAGAATCCTCAGCGGTGGACCAACATTCCTTTGCTGGTCAAGATCTTTAAACTTATCGTCAACGAACTCTCTTCTGTGGTAGAGGCTAATGCAAACAGAGCAAATCCTGCAGACTGGAGCCAAGACTCTGGTGGAATGTGGGATGATCTGGCGGAAGAAGAGGATGAGGAAGAGGAAGATGAAGGACTAGCCGGACAGCTTCTGTCTGATCTTATTGCTTCCAACAAATATGATGATGATTattatgaggatgatgatgatgaagatccaGATGCTCTGAAGGATCCGATATTTCAAATTGACCTTCAGGCTTATCTGACAGATTTCCTGACCCAGTTTGCTCAGCAGCCTTGCTATAGCATGTTTTCCAGCCACTTAAATGAGGTCGAGAGAAGAGTCTTGCAGTCCATAGGTATTTGAGCTGTATCCCAAATTCCAACATCGGCTCCTTGTCCTTTGTTTCCGTCTTTACCACTcagtcatcttttttttttttcaaacttgaaCATTTGAGTGGCATTTCGGACGACGCTCTCGACCCACAAGCCAAAAGAGGACTAAAGTAAAGGTTTACGTGTCTCTCCCTGTGTTTTATTAAGGGAAGGGATGGACATTGAGTCTTTGGGATGTTATAAGAGCAGGGTGTGATGTGCTTTTTTTTGCATCCCAGACCTGACCGAATGGGTACATTTGAATCGGAGTTCAAAACACTACTGTGCTTTGATTGACCCGTCTGGTATGATGAATGAATTTTTCTGCAATGGGACTGGAAATGGTATAGGAACGATTTAAAAGTATGAACTGTCCATTTATACCTTCTCGCTTTATTAAGTCACAATGGTTACATAATCTTTCTGTAGAGGAAGGTAAAAAGACTTATGATGACAGATGATGAATCTGAACTTTGAAAAGAAGTTGGAACTGTTGGCGGCCTTATTAAAATTATCCATGTTGTTTGTCATTATGTGGTCTCACGAGCATGATCTTTATAGCTGCACTGTGTTGGGTAAGCATGAAGAATCATAGTGTTATCGTGGTGATTCTAGACTTATTAACACTGTAGTATGAGAACACTTTCCAAATAAAAGGCCTGGTAAGGTCTCATTTGTAATTGTATCTAGTTTTTGGAAAACTTAAGACATCTGTATGacagtatttttactgtaaaatgataaaaatgttaGTAACTGCCCTTAGAATTAATATACAATTTACAACTACTACCTTCAAATTATGATAATTGTACTTAGTGACTGTAGAAACGTGTTAGATTACACATTTTAGGTAATATAAGcaattaattttgaccttatttaTCATATGGATTTGAATAGAGTTATAGATATTATAGATAGATATTTTTTCCtgttaataatatttctaaaggagctgttgacaaggAATTAAAcctgattttggtaaaaacccaaacaatacaaacacaaaaataaaacaaaacaactattAAAAACGTTGGACTCAAGCACCTAATATGAATTTACAATGATAAAGGGcagagttgctgaagaactactgtatgatttcagctgctgtctgggctttttatgcatttctacacctcactttcttcatgtgttcaatactttttctcaGTGTCATTTCCTTTTATTAggaataacttaatttgtaaactaattagatttgttttctttgcatatatggatttctttggttgttaccaatatCTGggaaaaatttcaagtcaatagcacctttagaaatatgttttgtgaGAAAAATGGTGGCGTGTTCAATACTAATTTTCTCCACTGTACACTATATTGGataaacaaaaaatagaaaaaggaACATTAAATCCGTTTTTTATCAAGATGAAGTGTATTAAACCTTGCATTACATTGGTATTTCCCAAACGTGTTTGtaagttgatgaaaaaagttcaattattacaatgtaaaattaaaataaggatatctttttttttattttattttttttacctcaatGTTGTATGGTCATCAGAAAACTTTGAATATGCAAATATGTTGAACTTCAGGCAACTGAAATTCCAGGTGTACCTTAAGTATATATTTCAGATGCAATGGGTTTAGCCCAACAGCAGCAAAGAATCCATGCATTGCTTGAACAAACGTTAATAAACATGAATATGAAATTA

Function

symbol description
ipo9 Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in cytosol and nuclear envelope. Is expressed in several structures, including blood; immature eye; nervous system; ventral mesenchyme; and ventral mesoderm. Orthologous to human IPO9 (importin 9).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006606 protein import into nucleus biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005635 nuclear envelope cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040426-2953 Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in cytosol and nuclear envelope. Is expressed in several structures, including blood; immature eye; nervous system; ventral mesenchyme; and ventral mesoderm. Orthologous to human IPO9 (importin 9).

Ensembl:

ensembl_id ENSDARG00000016753

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006767 True 4947 mRNA 0.45 24 24851671 24876621

Neighbor

gene id symbol gene type direction distance location
XLOC_003455 kdm5ba coding upstream 207 24819324 ~ 24851464 (+)
XLOC_003454 rabif coding upstream 34034 24815667 ~ 24817637 (+)
XLOC_003453 adipor1a coding upstream 36478 24800156 ~ 24815193 (+)
XLOC_003452 cyb5r1 coding upstream 51996 24786378 ~ 24799675 (+)
XLOC_003451 rnpep coding upstream 68553 24758967 ~ 24783118 (+)
XLOC_003457 shisa4 coding downstream 1199 24877820 ~ 24888595 (+)
XLOC_003458 lmod1b coding downstream 12549 24889170 ~ 24894907 (+)
XLOC_003459 timm17a coding downstream 23502 24900123 ~ 24906264 (+)
XLOC_003460 sulf2a coding downstream 30848 24907469 ~ 24993225 (+)
XLOC_003461 zgc:92107 coding downstream 118084 24994705 ~ 25043214 (+)
XLOC_003369 CR854846.2 misc upstream 8728589 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12139675 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12157408 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12166072 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12171643 12679732 ~ 12680028 (+)
XLOC_003447 BX072564.1 non-coding upstream 270557 24580579 ~ 24581114 (+)
XLOC_003442 NA non-coding upstream 541026 24120291 ~ 24310645 (+)
XLOC_003444 AL831791.1 non-coding upstream 672733 24178823 ~ 24178938 (+)
XLOC_003443 NA non-coding upstream 674020 24176418 ~ 24177651 (+)
XLOC_003441 FP102969.1 non-coding upstream 700454 24116083 ~ 24151217 (+)
XLOC_003463 NA non-coding downstream 182841 25059462 ~ 25060098 (+)
XLOC_003466 NA non-coding downstream 305236 25181857 ~ 25228195 (+)
XLOC_003467 NA non-coding downstream 380191 25256812 ~ 25266235 (+)
XLOC_003487 NA non-coding downstream 952749 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 1201326 26077947 ~ 26078061 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_02699041_02741501 IPO9 coding CI01000306 null 2698724 ~ 2742267 (+)