G1525035 (LOC101478692)


Basic Information

Item Value
gene id G1525035
gene name LOC101478692
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20300556 ~ 20301395 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1746182
ATCTATGTCATATCGCAGAGTATCTTTAAACCTAATCACAAGTACTACGTACCATTTAGAATGCTCTGGAAGCCACTGATGGTCTCTTTGAGTGGCACCAGCTTGCCAGCGTGACCAGTGAAGACCTCCGCCACCTGGAAAGGCTGGGACAGGAAACGCTGGATCTTGCGGGCGCGAGACACAATCAGCTTGTCCTCTTCAGACAACTCATCCATACCCAGGATGGCAATGATATCCTGCAGGGACTTGTAGTCCTGAGGATCTTCTGCACGCCACGAGCAACATCATAGTGCTCGGCACCGACAATGTTGGGGTCCATGATACGGGAGGTGGAATCCAGGGGATCCACAGCGGGATAGATACCCAGCTCAGCGATGGCACGGGACAACACAGTGGTGGCGTCCAAGTGAGCGAAGGTGGTGGCAGGGGCAGGATCAGTCAAATCATCAGCTGGCACATAGATTGCCTTAGAGAAGACA
>TU1746183
ATCTATGTCATATCGCAGAGTATCTTTAAACCTAATCACAAGTACTACGTACCATTTAGAATGCTCTGGAAGCCACTGATGGTCTCTTTGAGTGGCACCAGCTTGCCAGCGTGACCAGTGAAGACCTCCGCCACCTGGAAAGGCTGGGACAGGAAACGCTGGATCTTGCGGGCGCGAGACACAATCAGCTTGTCCTCTTCAGACAACTCATCCATACCCAGGATGGCAATGATATCCTGCAGGGACTTGTAGTCCTGAGAGGCAAGAGTTCTGGAGGATCTTCTGCACGCCACGAGCAACATCATAGTGCTCGGCACCGACAATGTTGGGGTCCATGATACGGGAGGTGGAATCCAGGGGATCCACAGCGGGATAGATACCCAGCTCAGCGATGGCACGGGACAACACAGTGGTGGCGTCCAAGTGAGCGAAGGTGGTGGCAGGGGCAGGATCAGTCAAATCATCAGCTGGCACATAGATTGCCTTAGAGAAGACA

Function

NR:

description
Low-density lipoprotein receptor-related protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1746182 False 479 lncRNA 0.53 2 20300556 20301395
TU1746183 True 496 lncRNA 0.53 2 20300556 20301395

Neighbor

gene id symbol gene type direction distance location
LOC110495787 LOC106574546 coding downstream 9736 20259167 ~ 20290820 (-)
LOC110495786 LOC106574549 coding downstream 45336 20251274 ~ 20255220 (-)
LOC110495785 LOC106574553 coding downstream 52223 20239912 ~ 20248333 (-)
LOC110495781 LOC106574547 coding downstream 108378 20178601 ~ 20192178 (-)
LOC110495778 LOC106575314 coding downstream 159714 20113306 ~ 20140842 (-)
LOC110495789 LOC106574554 coding upstream 3292 20304687 ~ 20309450 (-)
LOC110495790 LOC106574555 coding upstream 50093 20351488 ~ 20462793 (-)
LOC110495793 LOC106575303 coding upstream 166787 20468182 ~ 20523875 (-)
LOC110497093 LOC106574562 coding upstream 257162 20558557 ~ 20595753 (-)
LOC110495796 LOC106575332 coding upstream 315339 20616734 ~ 20620719 (-)
G1525060 NA non-coding downstream 32821 20267247 ~ 20267735 (-)
G1525059 NA non-coding downstream 34101 20266167 ~ 20266455 (-)
G1525057 NA non-coding downstream 49902 20250407 ~ 20250654 (-)
G1525022 NA non-coding downstream 104542 20195809 ~ 20196014 (-)
G1525012 NA non-coding downstream 132685 20167646 ~ 20167871 (-)
G1525105 NA non-coding upstream 226323 20527718 ~ 20528164 (-)
G1525107 NA non-coding upstream 229630 20531025 ~ 20531299 (-)
G1525132 NA non-coding upstream 252528 20553923 ~ 20554810 (-)
G1525152 NA non-coding upstream 314391 20615786 ~ 20616039 (-)
G1525195 NA non-coding upstream 348787 20650182 ~ 20650404 (-)
G1524755 LOC106581475 other downstream 570488 19722745 ~ 19730068 (-)
LOC110495764 LOC106574529 other downstream 723456 19573628 ~ 19577133 (-)
G1524473 LOC106574589 other downstream 1136430 19143985 ~ 19164126 (-)
G1524311 NA other downstream 1551161 18749125 ~ 18749395 (-)
G1523241 NA other downstream 1733309 18561906 ~ 18567247 (-)
G1527230 NA other upstream 1960661 22262056 ~ 22262462 (-)
G1528018 NA other upstream 2570650 22872045 ~ 22885833 (-)
LOC110495841 LOC106574435 other upstream 2858163 23008547 ~ 23168591 (-)
LOC110495851 LOC106574449 other upstream 3180145 23479558 ~ 23541681 (-)

Expression


Co-expression Network