G1524124 (LOC106574554)


Basic Information

Item Value
gene id G1524124
gene name LOC106574554
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20305705 ~ 20306904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1745160
CTGTCATTGAAGGCCTCCACTCCAAACTTAGACACAGTGTAAGGTCCTCCACCTGGACTGATCCTGCCAAACACACTGGCTACGTTGACCACGCGACCCCTGGCCTTCTTGATGAGGGGCAGCACACTCAGGGTGACTGCGATGACCCCGTTCAGGTTCACGTCCAGCATGGACTTGTAGTCATCAATGGTCAGCCAATCACATGGGGCCGAGGGCATGGCCACGCCTGCGTTGTTCACCACAGCCCACAGACCTAGAAGGTGACAGGTCATTAGgcactgcatcgcagtgctagctgtgccaccagagactctgggttcgagcccaggctctgtcgcagccagccgcgaccgggaggtccatggggcgacgcacaattggcctagcgtcgtccgggttaggccggtagggatatccttgtctcatcgcgcactagcaacttctgtagcgggccgggcgcagtgcacgctaaccaggtctgacacattggtgcggctggcttccgggttggatgcgcgctttgttaagaagcagtgcggcttggttgggttgtgtttcggaggacgcatggctttcga
>TU1745162
CTGTCATTGAAGGCCTCCACTCCAAACTTAGACACAGTGTAAGGTCCTCCACCTGGACTGATCCTGCCAAACACACTGGCTACGTTGACCACGCGACCCCTGGCCTTCTTGATGAGGGGCAGCACACTCAGGGTGACTGCGATGACCCCGTTCAGGTTCACGTCCAGCATGGACTTGTAGTCATCAATGGTCAGCCAATCACATGGGGCCGAGGGCATGGCCACGCCTGCGTTGTTCACCACAGCCCACAGACCCCTAGCCCCAACTTTGTCTTTAATCAAAGCAGCTGCTTTGTCGACGCTCTCGTTCTTTTTGACATCCAGGTGGAGGGTGGTGAATCTGCCTGAACAGGCCTTCCTCAgatcttcctctcccttctctgtgaAGCAGGATGCGATCACACAGAAACCCAGCTCGTCCAGATGTCTGGCCAGTAGGTTGCCGAAACCAGAGTCACACCCCGTGATGTAGACATATTTGTCTCCTTTGCCTGGGACTCTTGGGATCTCCCGGAACCAGCGGTACAGGTAGTAAAACACCACCAGTCCAAGGAGGTACAGA

Function

NR:

description
retinol dehydrogenase 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1745160 False 578 lncRNA 0.59 2 20305705 20306363
TU1745162 True 561 TUCP 0.55 2 20305705 20306904

Neighbor

gene id symbol gene type direction distance location
LOC110495788 LOC106574550 coding upstream 3605 20296017 ~ 20302100 (+)
LOC110497092 NA coding upstream 59817 20244354 ~ 20245888 (+)
LOC110495784 LOC106574551 coding upstream 68952 20206484 ~ 20236753 (+)
si:busm1-52i16.2 LOC106574552 coding upstream 135360 20167233 ~ 20170345 (+)
LOC110495779 LOC106575341 coding upstream 141241 20162785 ~ 20164464 (+)
LOC110495791 LOC106575306 coding downstream 7174 20312098 ~ 20328610 (+)
LOC110495794 LOC106574560 coding downstream 221316 20527679 ~ 20552117 (+)
LOC110495795 LOC106574563 coding downstream 298523 20604886 ~ 20614129 (+)
LOC110495797 LOC106574564 coding downstream 357048 20663411 ~ 20696331 (+)
LOC110495798 LOC106575297 coding downstream 479706 20786069 ~ 20855643 (+)
G1524122 NA non-coding upstream 1238 20304224 ~ 20304467 (+)
G1524117 NA non-coding upstream 14879 20290510 ~ 20290826 (+)
G1524115 LOC106574546 non-coding upstream 16917 20288225 ~ 20288788 (+)
G1524101 NA non-coding upstream 37943 20267184 ~ 20267762 (+)
G1524100 LOC106574546 non-coding upstream 42991 20262130 ~ 20262714 (+)
G1524125 NA non-coding downstream 2124 20308487 ~ 20308953 (+)
G1524105 NA non-coding downstream 25461 20331824 ~ 20333289 (+)
G1524129 NA non-coding downstream 33151 20339514 ~ 20339810 (+)
G1524130 NA non-coding downstream 33518 20339881 ~ 20340281 (+)
LOC110495776 LOC106574545 other upstream 229393 20065965 ~ 20110618 (+)
LOC110495777 LOC106574545 other upstream 272060 19992559 ~ 20049054 (+)
LOC110495771 LOC106574539 other upstream 405686 19897030 ~ 19900020 (+)
G1523847 NA other upstream 477739 19775092 ~ 19827966 (+)
G1524181 LOC106574559 other downstream 166997 20473360 ~ 20483713 (+)
G1525320 NA other downstream 450328 20756691 ~ 20757412 (+)
LOC110497098 LOC106574424 other downstream 2293050 22599016 ~ 22641368 (+)
G1528194 NA other downstream 2852470 23158833 ~ 23161291 (+)
LOC110495887 LOC108430494 other downstream 4214372 24520697 ~ 24525649 (+)

Expression


Co-expression Network