G1524242 (LOC106574562)


Basic Information

Item Value
gene id G1524242
gene name LOC106574562
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20561493 ~ 20562121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1745285
CTGGGAATAGGCTTCTGGGGCTTCTTGGAGCCGAGCTTCTTCATGGCATTGTAGTACTTCTTCTGTTCCTCTGTCATGAAGATGTCCTGACCTCCAAACTTTTTCTTCTGTTGGTTGAAGTTGTCAATGATGACACCAATGAAGAGGTTGAGAGTGAAGAAGGAGCCAAAGATGATGAAGATGACGAAGTACAGATACATGTAGAGGTTCTGTTCATATTGGGGCTGAAGTTCCacctgaaacacaaa

Function

NR:

description
sodium channel protein type 2 subunit alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1745285 True 248 lncRNA 0.44 2 20561493 20562121

Neighbor

gene id symbol gene type direction distance location
LOC110495794 LOC106574560 coding upstream 9376 20527679 ~ 20552117 (+)
LOC110495791 LOC106575306 coding upstream 232883 20312098 ~ 20328610 (+)
LOC110495788 LOC106574550 coding upstream 259393 20296017 ~ 20302100 (+)
LOC110497092 NA coding upstream 315605 20244354 ~ 20245888 (+)
LOC110495784 LOC106574551 coding upstream 324740 20206484 ~ 20236753 (+)
LOC110495795 LOC106574563 coding downstream 42765 20604886 ~ 20614129 (+)
LOC110495797 LOC106574564 coding downstream 101290 20663411 ~ 20696331 (+)
LOC110495798 LOC106575297 coding downstream 223948 20786069 ~ 20855643 (+)
LOC110497094 LOC106575296 coding downstream 310379 20872500 ~ 20885233 (+)
gcg1 gcg1 coding downstream 325330 20887451 ~ 20890292 (+)
G1524241 LOC106574562 non-coding upstream 637 20557879 ~ 20560856 (+)
G1524179 NA non-coding upstream 6498 20553846 ~ 20554995 (+)
G1524182 NA non-coding upstream 34880 20499006 ~ 20526613 (+)
G1524154 NA non-coding upstream 190894 20370071 ~ 20370599 (+)
G1524137 NA non-coding upstream 215452 20345663 ~ 20346041 (+)
G1524272 LOC106579309 non-coding downstream 38016 20600137 ~ 20600848 (+)
G1524276 NA non-coding downstream 52094 20614215 ~ 20614829 (+)
G1525178 NA non-coding downstream 77428 20639549 ~ 20639831 (+)
G1525182 NA non-coding downstream 80382 20642503 ~ 20642820 (+)
G1525190 NA non-coding downstream 84949 20647070 ~ 20647390 (+)
G1524181 LOC106574559 other upstream 77780 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 254589 20305705 ~ 20306904 (+)
LOC110495776 LOC106574545 other upstream 485181 20065965 ~ 20110618 (+)
LOC110495777 LOC106574545 other upstream 527848 19992559 ~ 20049054 (+)
G1525320 NA other downstream 194570 20756691 ~ 20757412 (+)
LOC110497098 LOC106574424 other downstream 2037292 22599016 ~ 22641368 (+)
G1528194 NA other downstream 2596712 23158833 ~ 23161291 (+)
LOC110495887 LOC108430494 other downstream 3958614 24520697 ~ 24525649 (+)
G1530367 NA other downstream 4442640 25004761 ~ 25005609 (+)

Expression


Co-expression Network