G1525371


Basic Information

Item Value
gene id G1525371
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20839597 ~ 20841467 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1746538
catgcGCCAAGCAAGTGTTACAAGCTAAGCATTGTATAAACTGCTCATTTTTCACtaagccaatgagcttcagcaaAACGCAGTGACACAATAGGGTCATGCTCAGTCATTGCTGatgcatgccagatcttacaacgcctggataAGTATTTTGCgcatcagctaaccacatcatacagtatgttatagcaatctgtgcCTGACGTTACAGTTGATGACATGGCAGGCAACCATTGGTTGACGCATccaacgtctgagcaggggaaaACCACAGGTGTGTTGAAAGAGATGGGTTAATAAAGACTCAGCACGTTCACCAACGGTAAAGTTACACACACAATTATTGCTCTATTTATCGCAGTCACGTATTTCTGTACTAATTCTATTGTGGATTAGTAATTGCAATTAGTGTGcaatcaacagagagagagagagagcaataaacAAGGAATTGTATCTGTAAAATAAAATGTTGCATCAAGGTAAGAGGAAAGACTAGGTGCTTGTCCTGCCCAGGTTTGGACAAAGCCGTATTGACATCATGTGACAATAGAGATCTAGGCCAAGAGCCAGGTACACGCACACACGTTGGTATCTCTGGAGGTGACAGGACAGGATATCACTGCCATACCAACACCGTAAACTGACAGGTCTGCGCATAGGGAAGTCAGGTGTAAAATAATGATATAACTGAGCCTCTTGGTCATTCCAGGTCAGCCATATAAACATTCACACTACCTCCATGTTGTCATATAGTCACAGCCCTATAGACATTCACACTACCTCCATGTTGTCATACAGTCAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCACAGCCCTATATACATTaacactacctccatgttgtCATATAGTCACAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCACAGCCCTATAGACATTCACACTACCTCCATTTTGACATATAGTCACAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCACAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCACAGCCCTATAAACAGTCACACTACCTCCATGTTGTCATTTAGTCAGCCCTATAAACAGTCACACTACCTCCATGTTGTCATTTAGTCAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCACAGCCCTATAAACAGTCACACTACCTCCATGTTGTCATATAGTCAGCCCTATAAACAGTCACACTACCTCCATGTTGTCATTTAGTCAGCCCTATAGACATTCACACTACCTCCATGTTGTCATTTAGTCAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCACAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCAGACCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCACAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCAGCCCTATAGACAGTCACACTACCTCCATGTTGTCATATAGTCAGCCCTATAGACATTCACACTACCTCCATGTTGTCATATAGTCAGCCCTATAAACATtcacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1746538 True 1744 lncRNA 0.42 2 20839597 20841467

Neighbor

gene id symbol gene type direction distance location
LOC110495797 LOC106574564 coding upstream 143266 20663411 ~ 20696331 (+)
LOC110495795 LOC106574563 coding upstream 225468 20604886 ~ 20614129 (+)
LOC110495794 LOC106574560 coding upstream 287480 20527679 ~ 20552117 (+)
LOC110495791 LOC106575306 coding upstream 510987 20312098 ~ 20328610 (+)
LOC110495788 LOC106574550 coding upstream 537497 20296017 ~ 20302100 (+)
LOC110497094 LOC106575296 coding downstream 31033 20872500 ~ 20885233 (+)
gcg1 gcg1 coding downstream 45984 20887451 ~ 20890292 (+)
LOC118941068 adcy10 coding downstream 49242 20890709 ~ 20900107 (+)
LOC110495810 gemin8 coding downstream 127813 20969280 ~ 20979259 (+)
LOC110495811 LOC106574403 coding downstream 138582 20980049 ~ 21013013 (+)
G1525317 NA non-coding upstream 87387 20751981 ~ 20752210 (+)
G1525299 NA non-coding upstream 104579 20734379 ~ 20735018 (+)
G1525291 NA non-coding upstream 114391 20724987 ~ 20725206 (+)
G1525285 NA non-coding upstream 119911 20719370 ~ 20719686 (+)
G1525275 NA non-coding upstream 127230 20712160 ~ 20712367 (+)
G1525374 NA non-coding downstream 4775 20846242 ~ 20846619 (+)
G1525377 NA non-coding downstream 24434 20865901 ~ 20866260 (+)
G1525384 NA non-coding downstream 45261 20886728 ~ 20886941 (+)
G1525392 NA non-coding downstream 55451 20896918 ~ 20897122 (+)
G1525320 NA other upstream 82185 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 355884 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 532693 20305705 ~ 20306904 (+)
LOC110495784 LOC106574551 other upstream 604417 20206484 ~ 20236753 (+)
LOC110495776 LOC106574545 other upstream 763285 20065965 ~ 20110618 (+)
LOC110497098 LOC106574424 other downstream 1757946 22599016 ~ 22641368 (+)
G1528194 NA other downstream 2317366 23158833 ~ 23161291 (+)
LOC110495887 LOC108430494 other downstream 3679268 24520697 ~ 24525649 (+)
G1530367 NA other downstream 4163294 25004761 ~ 25005609 (+)
LOC110495895 LOC106574270 other downstream 4307516 25133210 ~ 25157338 (+)

Expression


Co-expression Network