G1525470


Basic Information

Item Value
gene id G1525470
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 21070867 ~ 21073268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1746661
TCGCAATTCACTTCATAGAAACAAATTGTTTTTTTATTACAACATTTCACTGTTTCCATTATTGGTAATGGTATGTGGTAGATTAACATGACTGCTGGGAATTTAGAAAACTCCAAATAATTTGATCGACTGCAGAACACATGGAATTAATTTCCAGTAATGATCTTTTTTCCTTACAATATTAAACAATTCAGAGACAGGGTGCAACACAAAAAGCTTATCCCAAATCACATCGATAAAAAAGGTCACCGTACAATAAACGTTTTAAAAACATCAACGTAAATAAAGTCCACGCGAGTATCTCCCAAGACTAGATGGATTATGTTTTTTCATCCTTGGTTcgataaaaaaaatatctgacaGAAAACTTGTATTAACCGATGGGTATGTTAATCATATTaccagtgtaaaaacaaaaaaaggttTTGCATTTTTCCGAAACTAAAATATAAAAAGCCGGAGACCGTTGGGGCGTGTGTTACCAGGTCGACAAGAGGCCACACAGGAAATTGGATGTCGAACGAGAGACGCAACTTCCTAGATCCAAGGCCACGCCCACATCCTGTAGCCCTCTCTACCCCGTGTTGATGTTTGGACACCACACCCGACAACTTTGCTACCGTTCACCGTACCGCCCCTGGTTGGTTGGTAGTACTTCCTCATTCCTGGCCTGGCTAGGCGAGGGCCTGCTCCTCTATtggtggaggtggtaggaggggcggggtcagctcctgGACATGGATGGTCATCCATCGCAGTGCAGCTTTGTGTTGTTGGTCGGTTTTCTCTTGACAAGTTATACAGCTAAAAAGAAGTGAGTGAAAAGAAGGCAATGCAGGAGGAGGGGGTGTACAGTGCATGACGGAGGGATGGTCTTCACGACGACGCCTGCTTCTCCTGTTCAATGgctgggaaTTTCTTTAGTCGGCAGCGGATTCTTCTCCTGCGTCTCGGTCTTTTTCAGCTTGGTCTTGTCGAAGCTGGCGACCTCCTCGAGATTTGGCTTGTCAGACATGATTGCGAAGAATCTGTCAAAACGAGAAgcattgttttaattaaac
>TU1746663
TCGCAATTCACTTCATAGAAACAAATTGTTTTTTTATTACAACATTTCACTGTTTCCATTATTGGTAATGGTATGTGGTAGATTAACATGACTGCTGGGAATTTAGAAAACTCCAAATAATTTGATCGACTGCAGAACACATGGAATTAATTTCCAGTAATGATCTTTTTTCCTTACAATATTAAACAATTCAGAGACAGGGTGCAACACAAAAAGCTTATCCCAAATCACATCGATAAAAAAGGTCACCGTACAATAAACGTTTTAAAAACATCAACGTAAATAAAGTCCACGCGAGTATCTCCCAAGACTAGATGGATTATGTTTTTTCATCCTTGGTTcgataaaaaaaatatctgacaGAAAACTTGTATTAACCGATGGGTATGTTAATCATATTaccagtgtaaaaacaaaaaaaggttTTGCATTTTTCCGAAACTAAAATATAAAAAGCCGGAGACCGTTGGGGCGTGTGTTACCAGGTCGACAAGAGGCCACACAGGAAATTGGATGTCGAACGAGAGACGCAACTTCCTAGATCCAAGGCCACGCCCACATCCTGTAGCCCTCTCTACCCCGTGTTGATGTTTGGACACCACACCCGACAACTTTGCTACCGTTCACCGTACCGCCCCTGGTTGGTTGGTAGTACTTCCTCATTCCTGGCCTGGCTAGGCGAGGGCCTGCTCCTCTATtggtggaggtggtaggaggggcggggtcagctcctgGACATGGATGGTCATCCATCGCAGTGCAGCTTTGTGTTGTTGGTCGGTTTTCTCTTGACAAGTTATACAGCTAAAAAGAAGTGAGTGAAAAGAAGGCAATGCAGGAGGAGGGGGTGTACAGTGCATGACGGAGGGATGGTCTTCACGACGACGCCTGCTTCTCCTGTTCAATGgCTTTCTTTAGTCGGCAGCGGATTCTTCTCCTGCGTCTCGGTCTTTTTCAGCTTGGTCTTGTCGAAGCTGGCGACCTCCTCGAGATTTGGCTTGTCAGACATGATTGCGAAGAATCTGTCAAAACGAGAAgcattgttttaattaaac
>TU1746664
TCGCAATTCACTTCATAGAAACAAATTGTTTTTTTATTACAACATTTCACTGTTTCCATTATTGGTAATGGTATGTGGTAGATTAACATGACTGCTGGGAATTTAGAAAACTCCAAATAATTTGATCGACTGCAGAACACATGGAATTAATTTCCAGTAATGATCTTTTTTCCTTACAATATTAAACAATTCAGAGACAGGGTGCAACACAAAAAGCTTATCCCAAATCACATCGATAAAAAAGGTCACCGTACAATAAACGTTTTAAAAACATCAACGTAAATAAAGTCCACGCGAGTATCTCCCAAGACTAGATGGATTATGTTTTTTCATCCTTGGTTcgataaaaaaaatatctgacaGAAAACTTGTATTAACCGATGGGTATGTTAATCATATTaccagtgtaaaaacaaaaaaaggttTTGCATTTTTCCGAAACTAAAATATAAAAAGCCGGAGACCGTTGGGGCGTGTGTTACCAGGTCGACAAGAGGCCACACAGGAAATTGGATGTCGAACGAGAGACGCAACTTCCTAGATCCAAGGCCACGCCCACATCCTGTAGCCCTCTCTACCCCGTGTTGATGTTTGGACACCACACCCGACAACTTTGCTACCGTTCACCGTACCGCCCCTGGTTGGTTGGTAGTACTTCCTCATTCCTGGCCTGGCTAGGCGAGGGCCTGCTCCTCTATtggtggaggtggtaggaggggcggggtcagctcctgGACATGGATGGTCATCCATCGCAGTGCAGCTTTGTGTTGTTGGTCGGTTTTCTCTTGACAAGTTATACAGCTAAAAAGAAGTGAGTGAAAAGAAGGCAATGCAGGAGGAGGGGGTGTACAGTGCATGACGGAGGGATGGTCTTCACGACGACGCCTGCTTCTCCTGTTCAATGgctgggaacagagagagagagagagacagagagacaaaaagaaCAGTGATGAGAATCTCACTGGCAACACCCTTGAGGCATAAATGGTCTTTCACTTACCCTAGGCCTATCATGTCTACTGTAGCGTAGCTTAGACACACAATGTTAATATTGAAAAGGTAGGATTAAATTCTATAGAAGTACCCGTAGGCCTACAGTAGCCTTCTTATGATGCATCCCACTGGGCAGACATTGGTTCAACAATTTCATCGAaatcaacgttgattcaaccagtgtgtgcccagtgggataggtctattaagatttttttttttaaatatagtaTTCATGTGTCATATCATAATGTCAGACTATTGCATAAATGTCTGTATCCTTACTTTCTTTAGTCGGCAGCGGATTCTTCTCCTGCGTCTCGGTCTTTTTCAGCTTGGTCTTGTCGAAGCTGGCGACCTCCTCGAGATTTGGCTTGTCAGACATGATTGCGAAGAATCAAGTTGGGACTGATTGACTAATTGTACTTCTCCAGGCTTCGCGTT
>TU1746665
TCGCAATTCACTTCATAGAAACAAATTGTTTTTTTATTACAACATTTCACTGTTTCCATTATTGGTAATGGTATGTGGTAGATTAACATGACTGCTGGGAATTTAGAAAACTCCAAATAATTTGATCGACTGCAGAACACATGGAATTAATTTCCAGTAATGATCTTTTTTCCTTACAATATTAAACAATTCAGAGACAGGGTGCAACACAAAAAGCTTATCCCAAATCACATCGATAAAAAAGGTCACCGTACAATAAACGTTTTAAAAACATCAACGTAAATAAAGTCCACGCGAGTATCTCCCAAGACTAGATGGATTATGTTTTTTCATCCTTGGTTcgataaaaaaaatatctgacaGAAAACTTGTATTAACCGATGGGTATGTTAATCATATTaccagtgtaaaaacaaaaaaaggttTTGCATTTTTCCGAAACTAAAATATAAAAAGCCGGAGACCGTTGGGGCGTGTGTTACCAGGTCGACAAGAGGCCACACAGGAAATTGGATGTCGAACGAGAGACGCAACTTCCTAGATCCAAGGCCACGCCCACATCCTGTAGCCCTCTCTACCCCGTGTTGATGTTTGGACACCACACCCGACAACTTTGCTACCGTTCACCGTACCGCCCCTGGTTGGTTGGTAGTACTTCCTCATTCCTGGCCTGGCTAGGCGAGGGCCTGCTCCTCTATtggtggaggtggtaggaggggcggggtcagctcctgGACATGGATGGTCATCCATCGCAGTGCAGCTTTGTGTTGTTGGTCGGTTTTCTCTTGACAAGTTATACAGCTAAAAAGAAGTGAGTGAAAAGAAGGCAATGCAGGAGGAGGGGGTGTACAGTGCATGACGGAGGGATGGTCTTCACGACGACGCCTGCTTCTCCTGTTCAATGgTTTCTTTAGTCGGCAGCGGATTCTTCTCCTGCGTCTCGGTCTTTTTCAGCTTGGTCTTGTCGAAGCTGGCGACCTCCTCGAGATTTGGCTTGTCAGACATGATTGCGAAGAATCAAAGTTGGGACTGATTGACTAATTGTACTTCTCCAGGCTTCGCGTT
>TU1746666
TCGCAATTCACTTCATAGAAACAAATTGTTTTTTTATTACAACATTTCACTGTTTCCATTATTGGTAATGGTATGTGGTAGATTAACATGACTGCTGGGAATTTAGAAAACTCCAAATAATTTGATCGACTGCAGAACACATGGAATTAATTTCCAGTAATGATCTTTTTTCCTTACAATATTAAACAATTCAGAGACAGGGTGCAACACAAAAAGCTTATCCCAAATCACATCGATAAAAAAGGTCACCGTACAATAAACGTTTTAAAAACATCAACGTAAATAAAGTCCACGCGAGTATCTCCCAAGACTAGATGGATTATGTTTTTTCATCCTTGGTTcgataaaaaaaatatctgacaGAAAACTTGTATTAACCGATGGGTATGTTAATCATATTaccagtgtaaaaacaaaaaaaggttTTGCATTTTTCCGAAACTAAAATATAAAAAGCCGGAGACCGTTGGGGCGTGTGTTACCAGGTCGACAAGAGGCCACACAGGAAATTGGATGTCGAACGAGAGACGCAACTTCCTAGATCCAAGGCCACGCCCACATCCTGTAGCCCTCTCTACCCCGTGTTGATGTTTGGACACCACACCCGACAACTTTGCTACCGTTCACCGTACCGCCCCTGGTTGGTTGGTAGTACTTCCTCATTCCTGGCCTGGCTAGGCGAGGGCCTGCTCCTCTATtggtggaggtggtaggaggggcggggtcagctcctgGACATGGATGGTCATCCATCGCAGTGCAGCTTTGTGTTGTTGGTCGGTTTTCTCTTGACAAGTTATACAGCTAAAAAGAAGTGAGTGAAAAGAAGGCAATGCAGGAGGAGGGGGTGTACAGTGCATGACGGAGGGATGGTCTTCACGACGACGCCTGCTTCTCCTGTTCAATGgctgggaacagagagagagagagagaTTTCTTTAGTCGGCAGCGGATTCTTCTCCTGCGTCTCGGTCTTTTTCAGCTTGGTCTTGTCGAAGCTGGCGACCTCCTCGAGATTTGGCTTGTCAGACATGATTGCGAAGAATCAAAGTTGGGACTGATTGACTAATTGTACTTCTCCAGGCTTCGCGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1746661 False 1061 lncRNA 0.44 2 21070867 21072296
TU1746663 False 1055 lncRNA 0.44 2 21070867 21072296
TU1746664 False 1443 lncRNA 0.43 2 21070867 21073268
TU1746665 False 1068 lncRNA 0.44 3 21070867 21073268
TU1746666 True 1093 lncRNA 0.44 3 21070867 21073268

Neighbor

gene id symbol gene type direction distance location
LOC110495811 LOC106574403 coding upstream 57854 20980049 ~ 21013013 (+)
LOC110495810 gemin8 coding upstream 91608 20969280 ~ 20979259 (+)
LOC118941068 adcy10 coding upstream 170760 20890709 ~ 20900107 (+)
gcg1 gcg1 coding upstream 180575 20887451 ~ 20890292 (+)
LOC110497094 LOC106575296 coding upstream 185634 20872500 ~ 20885233 (+)
LOC110495817 LOC106574411 coding downstream 103357 21176625 ~ 21257700 (+)
LOC110495818 LOC106574413 coding downstream 223928 21297196 ~ 21333742 (+)
LOC110495820 LOC106574417 coding downstream 853385 21926653 ~ 21939273 (+)
LOC110495821 LOC106575277 coding downstream 1046509 22119777 ~ 22125450 (+)
LOC110495822 LOC106575275 coding downstream 1402506 22475774 ~ 22477639 (+)
G1525481 NA non-coding upstream 18328 21051945 ~ 21052539 (+)
G1525466 NA non-coding upstream 35064 21035558 ~ 21035803 (+)
G1525464 NA non-coding upstream 40325 21030039 ~ 21030542 (+)
G1525463 NA non-coding upstream 40967 21029649 ~ 21029900 (+)
G1525462 NA non-coding upstream 42524 21027969 ~ 21028343 (+)
G1525499 NA non-coding downstream 15650 21088918 ~ 21089136 (+)
G1525500 NA non-coding downstream 16048 21089316 ~ 21090217 (+)
G1525502 LOC106574409 non-coding downstream 20595 21093863 ~ 21094264 (+)
G1525722 NA non-coding downstream 81745 21155013 ~ 21155431 (+)
G1525791 NA non-coding downstream 171558 21244826 ~ 21245657 (+)
G1525320 NA other upstream 313455 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 587154 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 763963 20305705 ~ 20306904 (+)
LOC110495784 LOC106574551 other upstream 835687 20206484 ~ 20236753 (+)
LOC110495776 LOC106574545 other upstream 994555 20065965 ~ 20110618 (+)
LOC110497098 LOC106574424 other downstream 1526145 22599016 ~ 22641368 (+)
G1528194 NA other downstream 2085565 23158833 ~ 23161291 (+)
LOC110495887 LOC108430494 other downstream 3447467 24520697 ~ 24525649 (+)
G1530367 NA other downstream 3931493 25004761 ~ 25005609 (+)
LOC110495895 LOC106574270 other downstream 4075715 25133210 ~ 25157338 (+)

Expression


Co-expression Network