G1525964 (LOC106574413)


Basic Information

Item Value
gene id G1525964
gene name LOC106574413
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 21331907 ~ 21333717 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1747193
ttgaacctttgACAATCGACAAATGCTACTTCATATTTGTACAGAGACACAAGCATTCCGATCCTCTTTCCTAAAATAGTGTCCACCGGATTCAAACATACATCTGAAATGAAACCGTTTTTGTGGCAACATTAAAGAGCAGATAATCGCTGCATCCAATACAAGGAAAGGATCATCCCAAACCACACCTAAGACACAAATTAATGAGTGAACCGATCCATTTTGTTCCTTTAAAAACAAAACGATTATCTGTAAAATATCCAGATGGTCCTTCTTTTGAAAGAAGACAAGAGTAAAAGAGAACATAATATGCTATGTGCATCATGGAGTGCCTGTGTGTGGTGGAGAGACGTATCCTACAACATTTGAGTTCATGGTCACTGGGTCATTCAGTGGTCAAGCTGAGGTCAAGCTGTGGCTCGTGGTGGCATCGACCTTGGTGAAATAATGACTGAGTTTGTAAGTGAAATGAGAGTGATGATTGTATTAGTCTTGTCCTCACTGTACCTAACAGCAAAGTGGAAGTGTTTTTCAGTTCGGGTTTGTGACAACTGCTAAGTACAGTAGGAAGTGAGTATTCACTCAGGAGAGGACAAAGTAGTTTGCATTATTTCCATGGATGAAAACAAGATTTGGAATAGACCTGAGAGATACTCACTAACATGCATGGCTGAACTACAAAGGACCTATCCCATTGCAAAGAGGGACCTATCCCATTACAAAACATGACAAAAATTAAAAATGCAATGCAAGCAGGGATTGCTTGTCTAAAATGCAACAGTACTTTTACACTTGTGGGTTTAAGGTACTACAAGGAAGAAAGTAATTATGTTGTCACAAAATATGTATAATTTACACATTAATGTATTAGGACACAATACCTTTTCTAGATTAGAAAGTAACATCGATAAATTGCATCAAAATAATTTCCCTAGATTTATAAATGTCTCCTATGTCTGGTAAACTGACCATAAATAACGTATGAACAATGTGTAAATGTAAGGGAAGATGTGCATATTGAAATTTATCTAGGCTATTTTCTTACACTTCAATAATTAATATCTGTCATATAAGCACAAGAAAATGGTAGTAAAAACATTTAAATTCATGGCTACTTTAGTTCCATAATCATGAAGGTGGGAGTTTGGCAAAGCTATAATTCACAACTGTACAGCTACGTAGCTCTTTCCTTCTTTCCCATTGCAAAGAGCGGTCTGTGGTCAAACGGTCTGTGGTCAAACGGTCTGTGGTTGAATCGAGGGTGGTCTGTGCGATTGACGTTGGCCCAAGGGGTGGTCCAAAGTGCCTAAAATAAAATGAGGTGGTAGCATGACATTTTCTGTGATGATTCAAGTTTGCGGATGGCCTATTCTAGTTCATAGTGGCCCAAAGTGCCTTGGAGGTGGCTTAATctaacctCTAGTTCCCAGGGGGTCTCAGTCCTGGGTTTCCAACCCTTCTAGGTGTTCGGGGATGGGCAGACCCGTGAGGACAGTCAGACACTTGTTCCACACATTGAAGACGGGACACACGGGCTGGGCGAAGGACACGTGGAACGTGTGCAGGTTCTGCGAGCCCACGGCGTCGTAGAAGGTAAGCGAGCCGGCGTCGTAGTCCAGCAGGACACCCACGCGGCGCAGGTGGGGCGAAGGCTCGATGGCCAGCTCCTTGCTGTTGTGACGCACCACCCACGAGTTGTTGCAGCGGCACAGGACCCAGGAGGCCGAGTTCTTGCCGATCCACTCGTGCTTGGGGGCCGACTTGTAGGCGAT

Function

NR:

description
E3 ubiquitin-protein ligase Midline-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1747193 True 1772 lncRNA 0.43 2 21331907 21333717

Neighbor

gene id symbol gene type direction distance location
LOC118941122 LOC106610709 coding downstream 104460 21222811 ~ 21227447 (-)
LOC110495815 LOC106574410 coding downstream 157935 21164578 ~ 21173972 (-)
LOC110495814 LOC106574409 coding downstream 224383 21089235 ~ 21107524 (-)
LOC110495813 prps2 coding downstream 243885 21075185 ~ 21088022 (-)
LOC100136027 NA coding downstream 258643 21070882 ~ 21073322 (-)
LOC110495819 LOC106575280 coding upstream 472677 21806394 ~ 21812566 (-)
LOC110495824 LOC106575275 coding upstream 1130479 22464196 ~ 22477509 (-)
LOC110495825 LOC106574420 coding upstream 1179504 22513221 ~ 22522015 (-)
LOC110495827 LOC106574421 coding upstream 1204270 22537987 ~ 22590992 (-)
LOC110497099 NA coding upstream 1346940 22680498 ~ 22690348 (-)
G1525965 NA non-coding downstream 294 21330834 ~ 21331613 (-)
G1525918 NA non-coding downstream 69238 21262442 ~ 21262669 (-)
G1525915 LOC106574411 non-coding downstream 74208 21255245 ~ 21257699 (-)
G1525867 NA non-coding downstream 118701 21211798 ~ 21213206 (-)
G1525723 NA non-coding downstream 176804 21154868 ~ 21155103 (-)
G1525973 NA non-coding upstream 10653 21344370 ~ 21344571 (-)
G1526015 NA non-coding upstream 45660 21379377 ~ 21379586 (-)
G1526029 NA non-coding upstream 53863 21387580 ~ 21387831 (-)
G1526034 NA non-coding upstream 57429 21391146 ~ 21391356 (-)
G1526051 NA non-coding upstream 70078 21403795 ~ 21404033 (-)
LOC110497093 LOC106574562 other downstream 760040 20558557 ~ 20595753 (-)
G1524755 LOC106581475 other downstream 1601839 19722745 ~ 19730068 (-)
LOC110495764 LOC106574529 other downstream 1754807 19573628 ~ 19577133 (-)
G1524473 LOC106574589 other downstream 2167781 19143985 ~ 19164126 (-)
G1524311 NA other downstream 2582512 18749125 ~ 18749395 (-)
G1527230 NA other upstream 928339 22262056 ~ 22262462 (-)
G1528018 NA other upstream 1538328 22872045 ~ 22885833 (-)
LOC110495841 LOC106574435 other upstream 1825841 23008547 ~ 23168591 (-)
LOC110495851 LOC106574449 other upstream 2147823 23479558 ~ 23541681 (-)
LOC110495852 LOC106574460 other upstream 2208889 23542411 ~ 23543631 (-)

Expression


Co-expression Network