G1527279


Basic Information

Item Value
gene id G1527279
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 22303769 ~ 22311636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1748612
TATGTAACAGTTGTTGAAGTActatgtgaatttcaccaggttcatatatcaatatgttgtgttgatttgttatgcatgcctgcatcctgggagaaggggagtgtgtacttacgttttgcccggcgtgctcgtgctcaaatcattttgatgcactgagagagaaagaggcgacgattctcagaacagatgtgctctacaaatgttttatttccttttggatgcagatgcaagatgcagagagtcagttctgcttgattaaaactacctgatctccaaagtccacgttTATGGTCTctatcaaccacacacaacgcagagttacagcggtgTAGTATAGCACCGGCTACATTGGTGCCTTCTAGACCCGGATTCATCGTTGATCGACGTCAGCTCAATCACCGCGGCGCTGCTGCTCTAGAGACTAAAAATATCATTGAGgggagtgtgtacttacgttttgcccggcgtgctcgtgctcaaatcattttgatgcactgagagaggtaggcacgctttttctgtcttcagaaaagtttgattcttttaagtacaaagtcatacacacaatgttttgttcatgaataatgatgtatatttagaggttactcataaatggatggtattgttaagatgcacttgtaattgtactttttaggaCGATATCAAtattctgaattcaacatgtggttaatagctagctaaggtattagcaggctattgtatgtgtgaacgatggctagctcctcgaatgatcccagtccctcctattgtgcatctgttgtagaaagaggcgacgattctcagaacagatgtgctctacaaatgttttatttccttttggatgcaggtatgtggttttatcaatgtaaaatatgttatgtATAATAAGGAGAGAGTGTATTAATTTTTGTATTgaaaatcattttgatgcactgagagagaaagaggcgacgattctcagaacagatgtgctctacaaatgttttatttccttttggatgcagatgcaagatgcagagagtcagttctgcttgattaaaactacctgatctccaaagtccacgttTATGGTCTctatcaaccacacacaacgcagagttacagcggtgTAGTATAGCACCGGCtacaca
>TU1748613
TATGTAACAGTTGTTGAAGTActatgtgaatttcaccaggttcatatatcaatatgttgtgttgatttgttatgcatgcctgcatcctgggagaaggggagtgtgtacttacgttttgcccggcgtgctcgtgctcaaatcattttgatgcactgagagaggtaggcacgctttttctgtcttcagaaaagtttgattcttttaagtacaaagtcatacacacaatgttttgttcatgaataatgatgtatatttagaggttactcataaatggatggtattgttaagatgcacttgtaattgtactttttaggaCGATATCAAtattctgaattcaacatgtggttaatagctagctaaggtattagcaggctattgtatgtgtgaacgatggctagctcctcgaatgatcccagtccctcctattgtgcatctgttgtagaaagaggcgacgattctcagaacagatgtgctctacaaatgttttatttccttttggatgcaggtatgtggttttatcaatgtaaaatatgttatgtATAATAAGGAGAGAGTGTATTAATTTTTGTATTgaaaatcattttgatgcactgagagagaaagaggcgacgattctcagaacagatgtgctctacaaatgttttatttccttttggatgcagatgcaagatgcagagagtcagttctgcttgattaaaactacctgatctccaaagtccacgttTATGGTCTctatcaaccacacacaacgcagagttacagcggtgTAGTATAGCACCGGCtacaca
>TU1748614
TATGTAACAGTTGTTGAAGTActatgtgaatttcaccaggttcatatatcaatatgttgtgttgatttgttatgcatgcctgcatcctgggagaaggggagtgtgtacttacgttttgcccggcgtgctcgtgctcaaatcattttgatgcactgagagaggtaggcacgctttttctgtcttcagaaaagtttgattcttttaagtacaaagtcatacacacaatgttttgttcatgaataatgatgtatatttagaggttactcataaatggatggtattgttaagatgcacttgtaattgtactttttaggaCGATATCAAtattctgaattcaacatgtggttaatagctagctaaggtattagcaggctattgtatgtgtgaacgatggctagctcctcgaatgatcccagtccctcctattgtgcatctgttgtagaaagaggcgacgattctcagaacagatgtgctctacaaatgttttatttccttttggatgcaggtatgtggttttatcaatgtaaaatatgttatgtATAATAAGGAGAGAGTGTATTAATTTTTGTATTgaaaatcattttgatgcactgagagagaaagaggcgacgattctcagaacagatgtgctctacaaatgttttatttccttttggatgcagatgcaagatgcagagagtcagttctgcttgattaaaactacctgatctccaaagtccacgttTATGGTCTctatcaaccacacacaacgcagagttacagcggtgTAGTATAGCACCGGCtacaca
>TU1748615
TATGTAACAGTTGTTGAAGTActatgtgaatttcaccaggttcatatatcaatatgttgtgttgatttgttatgcatgcctgcatcctgggagaaggggagtgtgtacttacgttttgcccggcgtgctcgtgctcaaatcattttgatgcactgagagaggtaggcacgctttttctgtcttcagaaaagtttgattcttttaagtacaaagtcatacacacaatgttttgttcatgaataatgatgtatatttagaggttactcataaatggatggtattgttaagatgcacttgtaattgtactttttaggaCGATATCAAtattctgaattcaacatgtggttaatagctagctaaggtattagcaggctattgtatgtgtgaacgatggctagctcctcgaatgatcccagtccctcctattgtgcatctgttgtagaaagaggcgacgattctcagaacagatgtgctctacaaatgttttatttccttttggatgcaggtatgtggttttatcaatgtaaaatatgttatgtATAATAAGGAGAGAGTGTATTAATTTTTGTATTgaaaatcattttgatgcactgagagagaaagaggcgacgattctcagaacagatgtgctctacaaatgttttatttccttttggatgcagatgcaagatgcagagagtcagttctgcttgattaaaactacctgatctccaaagtccacgttTATGGTCTctatcaaccacacacaacgcagagttacagcggtgTAGTATAGCACCGGCtacaca

Function

NR:

description
zonadhesin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1748612 False 1130 lncRNA 0.41 3 22303769 22311636
TU1748613 False 788 lncRNA 0.38 2 22303769 22311636
TU1748614 False 788 lncRNA 0.38 2 22303769 22311636
TU1748615 True 788 lncRNA 0.38 2 22303769 22311636

Neighbor

gene id symbol gene type direction distance location
LOC110495821 LOC106575277 coding upstream 178319 22119777 ~ 22125450 (+)
LOC110495820 LOC106574417 coding upstream 364496 21926653 ~ 21939273 (+)
LOC110495818 LOC106574413 coding upstream 970027 21297196 ~ 21333742 (+)
LOC110495817 LOC106574411 coding upstream 1046069 21176625 ~ 21257700 (+)
LOC110495811 LOC106574403 coding upstream 1290756 20980049 ~ 21013013 (+)
LOC110495822 LOC106575275 coding downstream 164138 22475774 ~ 22477639 (+)
LOC110495826 LOC106575273 coding downstream 255032 22566668 ~ 22596390 (+)
LOC110497098 LOC106574424 coding downstream 287380 22599016 ~ 22641368 (+)
LOC110495829 LOC106574429 coding downstream 388706 22700342 ~ 22713534 (+)
LOC110495834 LOC106574432 coding downstream 439052 22750688 ~ 22752806 (+)
G1527254 NA non-coding upstream 26245 22277307 ~ 22277524 (+)
G1527235 NA non-coding upstream 36748 22266796 ~ 22267021 (+)
G1527216 NA non-coding upstream 49879 22253656 ~ 22253890 (+)
G1526984 NA non-coding upstream 101118 22202387 ~ 22202651 (+)
G1526604 NA non-coding upstream 505216 21798266 ~ 21798553 (+)
G1527341 NA non-coding downstream 79771 22391407 ~ 22391806 (+)
G1527384 NA non-coding downstream 169065 22480701 ~ 22480916 (+)
G1527395 NA non-coding downstream 182794 22494430 ~ 22494654 (+)
G1527398 NA non-coding downstream 185536 22497172 ~ 22497382 (+)
G1527403 NA non-coding downstream 189509 22501145 ~ 22501407 (+)
G1525320 NA other upstream 1546357 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 1820056 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 1996865 20305705 ~ 20306904 (+)
LOC110495784 LOC106574551 other upstream 2068589 20206484 ~ 20236753 (+)
LOC110495776 LOC106574545 other upstream 2227457 20065965 ~ 20110618 (+)
G1528194 NA other downstream 847197 23158833 ~ 23161291 (+)
LOC110495887 LOC108430494 other downstream 2209099 24520697 ~ 24525649 (+)
G1530367 NA other downstream 2693125 25004761 ~ 25005609 (+)
LOC110495895 LOC106574270 other downstream 2837347 25133210 ~ 25157338 (+)

Expression


Co-expression Network