G1528079


Basic Information

Item Value
gene id G1528079
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 22995919 ~ 22997587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1749514
TTCAGAAGCACTGTTTTTGGTCACAACTCTTTATTTGCATTTCACATGGGCAGAATATACAATCACTCTTCACAGAAGACCAATTAAGGGAGACCATCAAAAAAATTACCCATAATACCCCCATTCTGTTAAACATGTCTACCTGTTAGTTCAATGCCTTACACATTCAAGATAAACATCAAATAAGGAAAAAAAGCTGTATCATTATCATTTAATTTAACCACTATCTTTTAATTTGAAGGATGAATTATGACATACTTCTTACATTAATCTCTTTACAAAGCCTTTCAATAATTATAATGGCCaatgaataaatcaaatcaaatcaaatacaattgttTTGGAGTAATGAGAGTAAGTTATTAGATATGTTTCTGAAATCTATTTACATTTCATATATGCTGTATTTCAAAAAGAATGGTCTTCCCTTCAGTCTCTGTGCTGCCTTTTCAGCAGAATAAATAACTCATCAATTGACAATAGAATCAGCTGAAAAGAAAGTCAAAGTAGATGACTGTAAAGCTACTGTTAAGCTAATACTGACTATGACTGGCAAAAGCCCATGGCACAAGAACCAAGAAAGAAACACTAGCCAACATAAATAAACACCCCGTCATATATTTCCTACTGCACTGTTGTCTGTACTCTTTTGTCAAATTAACTCCACATTGTCACTTCAACATTCAGTAGTCATATACACTCTGATATATGTGAGTGACGTCAGTTTTAGGGGTCAATAGAAACATTTCGACCAGTCACTCACTCCAAAGGTTCATGTGGATCATTTTATACAATCCAAAATATTGTAGTTGCGTTTGTGCGCTCTCTGGTACTTTCAAGTGACAATCCATCAGATAGGAAACatcaatagaaagagagagaataggatTTCAGTAAGACATAAAAGTATGAGCAATATTTGTACATGATGCATTGTTGAGTAAATGTATCCATCAACTATGCCTCTCCACTTATAGCTAAGTGATCCATTCCACAACACACCGCGCGTGGTGAGCGTTCCGTGAGTCAATGTGTTGCGCTGAATGAGCATTATACTAACATCGTCAATAGTTCCAGATGAGCAACTACACTTAAAAAGCTCCTCTAAGCAGTTTTAGCAGGTAGCTACAATAACCAATACTTATATCTGACCTTCCCGCAATGACAGCCACATATCTCATGTCTGTACAGAAAAGGGTATAATATGCATCCCTGCATTGAAATGTCCTTCATGTGAACTTGTGAATCACTTATGAATAACGGAACTGCATAAGCTCTACAactaaaaagctgaaatatactATAAGGACTGTTGAATGACTTCAAATATATTTGAAGAACGACACCCCAAAAAGTTTTGAAAGTTGAAACTGGATGTTGATACAGATTATTATTATCATCCTGTCAATGACTACGCTAATAACAGGTTATTGAAtacgctaccgttcaaaagtttggggtcgcgtagaaatgtccttgttttttgaaagaaaatcacatttttgaacCATTAAtatacatcaaattgatcagaaatacagtgtagacattgttaatgttgtaaatgactattgtggctggaaacagcagatttttttttacggattatctacataggcgtacagaggcccattatcagcaaccttcactcctgtgttccaatggcaca
>TU1749515
TTCAGAAGCACTGTTTTTGGTCACAACTCTTTATTTGCATTTCACATGGGCAGAATATACAATCACTCTTCACAGAAGACCAATTAAGGGAGACCATCAAAAAAATTACCCATAATACCCCCATTCTGTTAAACATGTCTACCTGTTAGTTCAATGCCTTACACATTCAAGATAAACATCAAATAAGGAAAAAAAGCTGTATCATTATCATTTAATTTAACCACTATCTTTTAATTTGAAGGATGAATTATGACATACTTCTTACATTAATCTCTTTACAAAGCCTTTCAATAATTATAATGGCCaatgaataaatcaaatcaaatcaaatacaattgttTTGGAGTAATGAGAGTAAGTTATTAGATATGTTTCTGAAATCTATTTACATTTCATATATGCTGTATTTCAAAAAGAATGGTCTTCCCTTCAGTCTCTGTGCTGCCTTTTCAGCAGAATAAATAACTCATCAATTGACAATAGAATCAGCTGAAAAGAAAGTCAAAGTAGATGACTGTAAAGCTACTGTTAAGCTAATACTGACTATGACTGGCAAAAGCCCATGGCACAAGAACCAAGAAAGAAACACTAGCCAACATAAATAAACACCCCGTCATATATTTCCTACTGCACTGTTGTCTGTACTCTTTTGTCAAATTAACTCCACATTGTCACTTCAACATTCAGTAGTCATATACACTCTGATATATGTGAGTGACGTCAGTTTTAGGGGTCAATAGAAACATTTCGACCAGTCACTCACTCCAAAGGTTCATGTGGATCATTTTATACAATCCAAAATATTGTAGTTGCGTTTGTGCGCTCTCTGGTACTTTCAAGTGACAATCCATCAGATAGGAAACatcaatagaaagagagagaataggatTTCAGTAAGACATAAAAGTATGAGCAATATTTGTACATGATGCATTGTTGAGTAAATGTATCCATCAACTATGCCTCTCCACTTATAGCTAAGTGATCCATTCCACAACACACCGCGCGTGGTGAGCGTTCCGTGAGTCAATGTGTTGCGCTGAATGAGCATTATACTAACATCGTCAATAGTTCCAGATGAGCAACTACACTTAAAAAGCTCCTCTAAGCAGTTTTAGCAGGTAGCTACAATAACCAATACTTATATCTGACCTTCCCGCAATGACAGCCACATATCTCATGTCTGTACAGAAAAGGGTATAATATGCATCCCTGCATTGAAATGTCCTTCATGTGAACTTGTGAATCACTTATGAATAACGGAACTGCATAAGCTCTACAactaaaaagctgaaatatactATAAGGACTGTTGAATGACTTCAAATATATTTGAAGAACGACACCCCAAAAAGTTTTGAAAGTTGAAACTGGATGTTGATACAGATTATTATTATCATCCTGTCAATGACTACGCTAATAACAGGTTATTGAAtacgctaccgttcaaaagtttggggtcgcgtagaaatgtccttgttttttgaaagaaaatcacatttttgaacCATTAAtatacatcaaattgatcagaaatacagtgtagacattgttaatgttgtaaatgactattgtggctggaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1749514 False 1669 lncRNA 0.35 1 22995919 22997587
TU1749515 True 1583 lncRNA 0.35 1 22995919 22997501

Neighbor

gene id symbol gene type direction distance location
LOC110495835 en1 coding upstream 222245 22769391 ~ 22773674 (+)
LOC110495834 LOC106574432 coding upstream 243113 22750688 ~ 22752806 (+)
LOC110495829 LOC106574429 coding upstream 282385 22700342 ~ 22713534 (+)
LOC110497098 LOC106574424 coding upstream 354551 22599016 ~ 22641368 (+)
LOC110495826 LOC106575273 coding upstream 399529 22566668 ~ 22596390 (+)
LOC110495843 LOC106574436 coding downstream 187837 23185424 ~ 23198238 (+)
LOC110495847 LOC106574438 coding downstream 271288 23268875 ~ 23273932 (+)
LOC110495849 LOC106574443 coding downstream 321156 23318743 ~ 23342541 (+)
LOC110495853 LOC106574225 coding downstream 556263 23553850 ~ 23564696 (+)
LOC110495857 LOC106575156 coding downstream 568000 23565587 ~ 23570089 (+)
G1528078 NA non-coding upstream 479 22995155 ~ 22995440 (+)
G1528059 NA non-coding upstream 33166 22955752 ~ 22962753 (+)
G1528057 NA non-coding upstream 40253 22955377 ~ 22955666 (+)
G1527985 NA non-coding upstream 93281 22901743 ~ 22902638 (+)
G1527970 NA non-coding upstream 110758 22871552 ~ 22885161 (+)
G1528110 NA non-coding downstream 43695 23041282 ~ 23041485 (+)
G1528117 NA non-coding downstream 50310 23047897 ~ 23048125 (+)
G1528124 NA non-coding downstream 62927 23060514 ~ 23060763 (+)
G1528125 NA non-coding downstream 63402 23060989 ~ 23061226 (+)
G1528131 NA non-coding downstream 72898 23070485 ~ 23070718 (+)
G1525320 NA other upstream 2238507 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 2512206 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 2689015 20305705 ~ 20306904 (+)
LOC110495784 LOC106574551 other upstream 2760739 20206484 ~ 20236753 (+)
G1528194 NA other downstream 161246 23158833 ~ 23161291 (+)
LOC110495887 LOC108430494 other downstream 1523148 24520697 ~ 24525649 (+)
G1530367 NA other downstream 2007174 25004761 ~ 25005609 (+)
LOC110495895 LOC106574270 other downstream 2151396 25133210 ~ 25157338 (+)
G1530785 NA other downstream 2568884 25566471 ~ 25571346 (+)

Expression


Co-expression Network