G1529050 (LOC106574443)


Basic Information

Item Value
gene id G1529050
gene name LOC106574443
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23340500 ~ 23342444 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1750629
TGATTCTGGCTATAGAAAATTCTGTAAAAACAGGATTTTTGTTTAAAGATCCCAAAAGGTGTCAATATTAGTGTTTACCCTCCAACAGTAGTTCAGCCAACACTtcacatttctattgttgtgtttttgtgcattCCATTCacaatgtacacaaacaagtgaATCATCGTAAGGACATTTTGTCCATTTATATTTCTAAGCTGAGGCCTCTGCTTTGCTTTTGTAGTGGTTAATTTCTAGAAGATGTAGTGTTAACTAACAGTTAACTTCACACAGGGAACATTTGGCACAGTATCAAGTCTATCACCATTACCAaaagccttagaccactgcgctcctggtctaaggccctgcatctcagtgcaagaggctaCAGTCCCTGGCTCAAatcaaggctgtatcacatccggctgtgattgggagtcccatagggcggcacacaccaggtttggccgtcattgtaaataagaatgtgttcttaaccgacctgcctagttaaaggttaaactttttttaacatttttttttataaatgcgCCTCAAACTATTCATAGCTGCATTCATTGCATTACACTTGACAAGACTTCAATAGGCAAACAAACCACATTTACATTCTATTTACACAGTGTGGCTGTAGAATCATGTCAAGGCCAGGAAAAGTAACTGTTGTCAGTTTGACCATCTGGTCTTGCGGTACAGTAACTTTAAATAGCGTACGTACATCGAGGACACTGATAAGAAAgttccttacacacacacacacacacacaccagtggttaGGTTAAGACTGGTCCATACACAAAAAAAGTGAAAAGAAAAGTTGTTTTTCCTCATAGACCTACATACACTACTATCCCTGAATTTCTCAAATAAGGTCTGCAATATTTTTAAACCAAAAAGGAACACAACGTGCTTTTTGAACTGCTTAAATTCAAACCTACCCTCTCAAGTAAACCCTTTACACTGCATGTTTTCAATTCTCTATTCCCATGCATGACCTGTACATGGAAATGCACCTGATTAGTTGAATCGGCAAAAAATGCCTTTTGACCGATGTTCAATATTTTAATCCATAGATCACTTTTCCACGTTCATACCCAGACCTCACCCATGTACAACATTGTGTCACAAGAACAATACCTTAAAAAGATGACTATTGCTATCCTAACCAGCAGCAACAGGCTGTTTTTGTCTTTTTCCAGGCTCAGCGAAAACGAAGAAGTTCCTCTGTAGGCGTCACTTCAGAGTTCGGCCTTTAAACTATTTCACTTCTTTTAATGTTTAAACGGCTTGTGAAACAACTATCATTTCAACACCCTGACAGTCTCTGGTCTCCGAACCGGATGGCCAGAGCAGCTTCAGTTTGACACTATCCATTGCGGCAAAAGCAGTTCTGGAGCACGCTAGCTTAACCTCTACAGCCTAAGATTGATTAGTATTGGcaccactctcctcctcttcacttttgtccaggtcaaaggtcaaacgCCAGAGCATGGCCCACAGACGACAGTGCTGACTCAACTTAGTCTCTTCAGTTGCTTGATTAGTATCGGCACGCGCCGTCTCTTGATGGCCATAGGAGGTCAAAGGTCAGGGCCCACAGTTGACTGCGTTGAACCCAGAGAGCGTGACCTTGCCCTTGGTTTTGAGGTCGTGTTGCGAGGCGCTGTTCATCCTCTGGACCAGTAGCTTCTCAAAGAGCAGGGGATGGTACGCCCCAAGGGTGCAGGCGGCGTCGTAGTGGTGCTCGTGGTAGTGGCACAGGTCTGTCTGACGCAGAGAGGGGATGTACTCATAGACATGGACCTCCTCGCACAGCGACATCATCAGGACGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1750629 True 1839 lncRNA 0.43 2 23340500 23342444

Neighbor

gene id symbol gene type direction distance location
LOC110495846 LOC106574440 coding downstream 75413 23249040 ~ 23265087 (-)
LOC110495845 LOC106574439 coding downstream 117090 23213531 ~ 23223410 (-)
LOC110495844 LOC106574437 coding downstream 153893 23181819 ~ 23186607 (-)
LOC110495841 LOC106574435 coding downstream 172056 23008547 ~ 23168591 (-)
LOC110495839 LOC106575259 coding downstream 332648 22998590 ~ 23007852 (-)
LOC110496920 LOC106574445 coding upstream 117392 23459836 ~ 23478565 (-)
LOC110495851 LOC106574449 coding upstream 137114 23479558 ~ 23541681 (-)
LOC110495852 LOC106574460 coding upstream 199967 23542411 ~ 23543631 (-)
trnat-ugu-38 NA coding upstream 299427 23641871 ~ 23641943 (-)
wdsub1 LOC106574230 coding upstream 309993 23652437 ~ 23661732 (-)
G1528972 NA non-coding downstream 91570 23196164 ~ 23248930 (-)
G1528964 NA non-coding downstream 160190 23180037 ~ 23180310 (-)
G1528963 NA non-coding downstream 160467 23179766 ~ 23180033 (-)
G1528962 NA non-coding downstream 161178 23179123 ~ 23179322 (-)
G1528915 NA non-coding downstream 261855 23078416 ~ 23078645 (-)
G1529062 NA non-coding upstream 14547 23356991 ~ 23357190 (-)
G1529083 NA non-coding upstream 45062 23387506 ~ 23387761 (-)
G1529084 NA non-coding upstream 45792 23388236 ~ 23388473 (-)
G1529089 NA non-coding upstream 51729 23394173 ~ 23394483 (-)
G1529099 NA non-coding upstream 62291 23404735 ~ 23405006 (-)
G1528018 NA other downstream 454667 22872045 ~ 22885833 (-)
G1527230 NA other downstream 1078038 22262056 ~ 22262462 (-)
LOC110497093 LOC106574562 other downstream 2768633 20558557 ~ 20595753 (-)
G1524755 LOC106581475 other downstream 3610432 19722745 ~ 19730068 (-)
LOC110497104 LOC106574262 other upstream 937294 24279738 ~ 24371432 (-)
G1529613 NA other upstream 1050931 24393375 ~ 24393684 (-)
G1530967 LOC106574270 other upstream 1807624 25150068 ~ 25150994 (-)

Expression


Co-expression Network