G1528508


Basic Information

Item Value
gene id G1528508
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23679750 ~ 23681697 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1750031
TTCATGAGCATCCCGTGTTgccgtctcctctccctctcctagcagagcagagaaaacacacacacgttacacaccGGAGAAGGTGGAACCTCCACAGGTGAAGTCAGAGAGGTGGACAGAAGGAGGAAAACCCCCATTCACCTCCATCATGGCGAGGTTTTCACATACAGCAACACGTACAGTTGAAGCTGAGGTTAAGAAGACAACGGTACGAATGACGACAACCAGAAAGCATCAGAGGGAGAATGCGGTAGATGGCGATGACGGGGTCAAAAAAGAGAAGTTAGGGTCAAGCTATGATGCCTCTAGGTAAAAAGCTGACGGAACAAACGCAAAATGACAGAGTCATCATAGCCACAAGCCAGTCGGATGAAAACAAACATTGTGCTGTGTATCATCCATCTGTTTAGCTGATAGCCGTTCCAGATTGAAAATAGCCTAaacctatgggggggggggggtatctagTGAAGGTCTTACAAGGAGACTTGCGTGGTTGAGGATAGACTGTCTCCAAATGTTTTATTGTAAACCAATAGGATTTGATCAAGGCAAAGCGAGGACAGTGACTGCCTGTCTGGAAGGGATGGGGAACTCAGTGATGTGATAAACAGATAGAAGGCAATGAAACAGATCCTCTGGTGTCAGCTGCATAAATACAGTATGCAGGGGCCAGGAGTTTCTCCTGCTCAGGTTGATATTgttaggaaaaactcctggctctAATTGTGTGCAACAGACGCGCTCAACAAGcaatagccagccagccagtcaggctgctggagaaaacaggtaggTACAGCAATAGACAGACAGCCAGTGAggctgctggagaaaacaggcaGGTATAGCAATAGACAGACAGCCAGTGAggctgctggagaaaacaggcaGGTACAGATACAGAACAGAGCAGCAGAACGACTCAGGctacattccaaatggcaccctctaccctatgtagtgcactacttttgaccaaagtagtgcactatgaggTAGTGCACTATGCCATTTCAGACGCAACCTCAGAGACTCAATGGGACGTAACAGGTTAAAGGGCAGCTCTTTGTGGACGGAGACGGACACAAGCTCAATGTCTGGAACTGGAAAACTCAAGCACTCACAGCCACTCAAAAACAACAGCTAGACGATGGATGTGATGGATGACTCATCGAGAGGAGTGTACTTTCAGACAGTAAGAGTGAGCATGGCAGGGCTTGGCCGCCTTTTGCAATGCATTCGGAGCGAGGTCAGGTGTCTCAGAGCAGATGGAGGCGacacactgttgttgtttttgtttgtgtgtgtgtttgtttgtgtgtgtttgtttgttttgctgAAAAGCCATGCAGAATAATGTAGTATGATTGCAGCCAGTGCTACACTTAATGCATTGCTATGACAACCATATCACAACCAGGAAACACAATGCGGTGTTAGATGTACAAAAATAAACATACCCATACCATATCTAGTCTATGCCTCTCCAACTCCTGGCAGAGAGAGTTGGCAAAGTATTATGGAACAGAAATGAcagcaaaaaaaaacagattgttTAGCAGAAAAATACCCAAAGTTCAGAAATAACCCAATAGAATGGAAACTGACCAAAGAGAAACAGTAAAGAGTTGAATAAAATATCTAGTTACACACAAccttgaaacacacacacgcacgcacacacacacacacacacgcacacacacacacacacacaaacacgcacacacacccacacccacacacacacacacccacaaacacacaccctgtaaACACTGATCTAGCTGAAGTGTATATGGTTTTTAGTATAATTTCAATCATGTCAGAAGAGAAAAGGCGTGTTGCTAAAAAGCGCTGTGTACCTGGTGCTTTAAAATGACTGCATGCTGTCTTCGCATTTCTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1750031 True 1911 lncRNA 0.46 2 23679750 23681697

Neighbor

gene id symbol gene type direction distance location
LOC110495854 LOC106574228 coding upstream 28617 23587611 ~ 23651133 (+)
LOC110495855 LOC106574229 coding upstream 92903 23537127 ~ 23586847 (+)
LOC110495857 LOC106575156 coding upstream 109661 23565587 ~ 23570089 (+)
LOC110495853 LOC106574225 coding upstream 115054 23553850 ~ 23564696 (+)
LOC110495849 LOC106574443 coding upstream 337209 23318743 ~ 23342541 (+)
LOC110495861 LOC106574235 coding downstream 87851 23769548 ~ 23779632 (+)
LOC110495865 LOC106574241 coding downstream 230282 23911979 ~ 23918645 (+)
LOC110495871 sumo1 coding downstream 312325 23994022 ~ 23997602 (+)
LOC110497102 LOC106574246 coding downstream 397036 24078733 ~ 24100642 (+)
LOC110495875 LOC106575175 coding downstream 429575 24111272 ~ 24122645 (+)
G1528437 NA non-coding upstream 153883 23525518 ~ 23525867 (+)
G1528353 NA non-coding upstream 275563 23403929 ~ 23404187 (+)
G1528350 NA non-coding upstream 282003 23397518 ~ 23397747 (+)
G1528346 NA non-coding upstream 285388 23394116 ~ 23394362 (+)
G1528564 NA non-coding downstream 69079 23750776 ~ 23751144 (+)
G1528575 NA non-coding downstream 85980 23767677 ~ 23768235 (+)
G1528536 NA non-coding downstream 98646 23780343 ~ 23782312 (+)
G1528534 NA non-coding downstream 140152 23821849 ~ 23823652 (+)
G1528598 LOC106575164 non-coding downstream 142130 23823827 ~ 23824948 (+)
G1528194 NA other upstream 518459 23158833 ~ 23161291 (+)
LOC110497098 LOC106574424 other upstream 1068298 22599016 ~ 22641368 (+)
G1525320 NA other upstream 2922338 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 3196037 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 3372846 20305705 ~ 20306904 (+)
LOC110495887 LOC108430494 other downstream 839038 24520697 ~ 24525649 (+)
G1530367 NA other downstream 1323064 25004761 ~ 25005609 (+)
LOC110495895 LOC106574270 other downstream 1467286 25133210 ~ 25157338 (+)
G1530785 NA other downstream 1884774 25566471 ~ 25571346 (+)
G1530923 LOC106574292 other downstream 2156809 25838506 ~ 25840353 (+)

Expression


Co-expression Network