G1529491 (LOC106575185)


Basic Information

Item Value
gene id G1529491
gene name LOC106575185
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24218863 ~ 24221089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1751148
CACAACCTCCCTTTTAATGTCAGAACATTGCAAATAGTATATTGTGCATCACTTAGACGTTATTTACAAACACCAACAAAAGTGCTAATATCCGTTTTCTGTACCAGTTCCAAGTTACAGTAATGTTGAACAGCTCATATTAGAATAAtacatatacactacagtagTGTTCAATTGCTTGAGATAATGACAAATTGATAGTTTCTCAATACAGTAGTaacaatggatggatggatttaaaaaaaatatcggTATGAAATGACAAAGAGAACCTAGTGTGGCTAAATCCACAACCACAGTGGCTCGTCAGAATAAAACAAACAGAACGGAAGTGAGGCAGGTTCAATAGTTCCACAGTTGTTTTCCACAATACATTCCCTCGGCATATTAAAACAAAACCTAGGAAACTGGTGAGGGACAGCATGGAGTGAGAAATATAAAGTAACAAGAAAAACATTGTACTTGGTGGTGTTTTCTGGTTCAGCTATTTCTCTTCCAAAGTGCATTCTttattgcaaaaaaaaacaaaaaaacatcctggATAAACTAAATCAATTGACATGATACGCGATACGCGGTCTTCTagcaaatacatacagtaccagtgttAAAACTATGTTATTACAGTTCAATATTGAGAAACATTTGAGAAGCCGCAAATGTCAAAGTAACATCAACATGTGAAACATACCCTGGGAACAATGGGTTCTAAGGGCCACCAACGTAACATTGACAACTTAGACTGAAGTCAGTTGCAGTCGGCCTTGAAGCGTCACTGAAAACATAAATATGGCGTCAGCAGCACATCAAACTAAAACATACTCACCCCAGACATAAGATGCTTCCCTCCTTGCCATGATTGACACCTCTCTTCCGGCATCTCTCCATCTTGGTCCTCACACCCCTATTCCTCCACCCCGCCCTCTTGATCCCTCTTTCCTGGTCCTCACACCCTCTTCATTCATCCTCCTCCTTCGTCCTTACACCCCACTTTATTCATCCGTCCATTTTCTTTGTTGCATTTATCCATCTTAGTCCTGATCCCCCTCTTTCTTCACCCCTCTTGCTCCATCCCTGCATTCTAAACACTGGGGGCCTGTATTTGAGAGGTGACTTTTCTTTATTACAGGTTACAGTAGCGTTTCACTATTTACAGTCTAAGGGAGGGGAGGGGCAAAGAGGTGCTGTGGATAATAAAGCTTCTTCTTCTTGGGCAACTAGTTAAACATGATGGATTCTGGGTCCTGGTTCATCATCTGGGCCATGTGACGGAGGACATCCTTCTTAGTGATGATGCCCAACAGACGcCCGCTTCTGGTGACCAGACACTGTCGGAGGCCCAGCTTTCTGAAGATGTCCACCACGGTCTCCATGGGGGTGTGGTCCGTGACGGTGAAGGGGCTGAGGTTGAGGATGCGCCGCAGCTTCAGGGGCTGGGGGTCGCAGGCCTCGGCCACCTGGGGGTTGTCCTCCGTGAAGTAGACCACAGAGCTGCTCACCACCCCGTCCTGCTTCTGACGGGCAG

Function

NR:

description
H(+)/Cl(-) exchange transporter 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1751148 True 1525 lncRNA 0.44 2 24218863 24221089

Neighbor

gene id symbol gene type direction distance location
LOC110495883 LOC106575186 coding downstream 9408 24207344 ~ 24209455 (-)
LOC110495882 LOC106574255 coding downstream 42880 24167580 ~ 24175983 (-)
LOC110495873 LOC106575174 coding downstream 146504 24043236 ~ 24072359 (-)
LOC110495872 LOC106574245 coding downstream 215938 23999571 ~ 24002925 (-)
LOC110495870 LOC106574243 coding downstream 227961 23974941 ~ 23990902 (-)
LOC118941245 NA coding upstream 5181 24226270 ~ 24226399 (-)
LOC110497104 LOC106574262 coding upstream 59058 24279738 ~ 24371432 (-)
LOC110495886 LOC106575190 coding upstream 232141 24453230 ~ 24465553 (-)
LOC110495885 LOC106575192 coding upstream 257226 24478315 ~ 24519903 (-)
LOC110495891 pnpla4 coding upstream 399588 24620677 ~ 24629312 (-)
G1529494 LOC106574258 non-coding downstream 1639 24215801 ~ 24217224 (-)
G1529493 LOC106517624 non-coding downstream 5369 24212608 ~ 24213494 (-)
G1529453 NA non-coding downstream 105094 24111695 ~ 24113769 (-)
G1529451 NA non-coding downstream 109260 24109363 ~ 24109603 (-)
G1529449 NA non-coding downstream 110766 24105126 ~ 24108097 (-)
G1529530 NA non-coding upstream 46233 24267322 ~ 24267542 (-)
G1529542 NA non-coding upstream 65888 24286977 ~ 24287306 (-)
G1529544 NA non-coding upstream 70310 24291399 ~ 24291645 (-)
G1529545 NA non-coding upstream 70923 24292012 ~ 24292241 (-)
LOC110495852 LOC106574460 other downstream 675370 23542411 ~ 23543631 (-)
LOC110495851 LOC106574449 other downstream 677607 23479558 ~ 23541681 (-)
LOC110495841 LOC106574435 other downstream 1050272 23008547 ~ 23168591 (-)
G1528018 NA other downstream 1333030 22872045 ~ 22885833 (-)
G1527230 NA other downstream 1956401 22262056 ~ 22262462 (-)
G1529613 NA other upstream 172286 24393375 ~ 24393684 (-)
G1530967 LOC106574270 other upstream 928979 25150068 ~ 25150994 (-)
G1531142 NA other upstream 1298332 25519421 ~ 25523180 (-)
LOC110495915 NA other upstream 1352349 25571910 ~ 25574981 (-)

Expression


Co-expression Network