G1528808 (LOC104945625)


Basic Information

Item Value
gene id G1528808
gene name LOC104945625
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24306261 ~ 24306608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1750366
GCATCTTAAGTTAATAGTTTTTAATTAACAATCATTCGTTACTACATATTGACTAGTTGCTGGCTAGGGTACCTGATGCCTCCAACAGAGAGGTGTCCGTAGGAGCTGCTAGCTGCAGAGCTGGAGCGTGAGTTGTTGATGTAGGCCACCAGAGAGTTGGGCGAGGTACGGATCATGGTCTGCAGGTCGATGCTGGCGTCTGAGAGAGGCGAGATGGACAGGGCTCGCTTTCTGTTCAGCCTGGGGGTCAGTCTGGGACTGGGGAACCGTGACGCTGTGGAaaagaaaaacacacagacacatacagaccgTTAGTCTGACAACCTCTGAACTTCTCTCGGCTTCTCC

Function

NR:

description
PREDICTED: zinc finger protein GLI2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1750366 True 348 lncRNA 0.51 1 24306261 24306608

Neighbor

gene id symbol gene type direction distance location
LOC110495884 LOC106574260 coding upstream 43155 24222829 ~ 24263106 (+)
LOC100653456 LOC106574258 coding upstream 85162 24210985 ~ 24221099 (+)
LOC110497103 LOC106574257 coding upstream 104647 24199574 ~ 24201614 (+)
shroom2b NA coding upstream 106831 24176311 ~ 24199430 (+)
LOC110495878 LOC106574254 coding upstream 138666 24153245 ~ 24167595 (+)
LOC118941069 NA coding downstream 158930 24465538 ~ 24472111 (+)
LOC110495888 ralbb coding downstream 165491 24472099 ~ 24477037 (+)
LOC110495887 LOC108430494 coding downstream 214089 24520697 ~ 24525649 (+)
LOC110495890 LOC106574267 coding downstream 249629 24556237 ~ 24574771 (+)
LOC110495892 sts coding downstream 307635 24614243 ~ 24626367 (+)
G1528805 NA non-coding upstream 2132 24303788 ~ 24304129 (+)
G1528803 NA non-coding upstream 4823 24300892 ~ 24301438 (+)
G1528802 NA non-coding upstream 9837 24296112 ~ 24296424 (+)
G1528799 NA non-coding upstream 12822 24293175 ~ 24293439 (+)
G1528798 NA non-coding upstream 13415 24292620 ~ 24292846 (+)
G1528818 NA non-coding downstream 23679 24330287 ~ 24330521 (+)
G1528829 NA non-coding downstream 50609 24357217 ~ 24357421 (+)
G1528833 NA non-coding downstream 58649 24365257 ~ 24365530 (+)
G1528835 NA non-coding downstream 61686 24368294 ~ 24368502 (+)
G1529593 NA non-coding downstream 70508 24377116 ~ 24377335 (+)
G1528194 NA other upstream 1144970 23158833 ~ 23161291 (+)
LOC110497098 LOC106574424 other upstream 1694809 22599016 ~ 22641368 (+)
G1525320 NA other upstream 3548849 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 3822548 20473360 ~ 20483713 (+)
G1524124 LOC106574554 other upstream 3999357 20305705 ~ 20306904 (+)
G1530367 NA other downstream 698153 25004761 ~ 25005609 (+)
LOC110495895 LOC106574270 other downstream 842375 25133210 ~ 25157338 (+)
G1530785 NA other downstream 1259863 25566471 ~ 25571346 (+)
G1530923 LOC106574292 other downstream 1531898 25838506 ~ 25840353 (+)

Expression


Co-expression Network