G1529693


Basic Information

Item Value
gene id G1529693
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24540863 ~ 24541985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1751375
agaagaaggagatgaGAGTAAAGGAAGCTACACCTAAAGGAAATACAATCAGTTCAACAGACTCCTGAAGAAAGACAAAGGAAAGATGAAAGCTAGAtgtttttctctccttctcttgctGCTGGCATGTAGCTTTGGAGAGGGCCTGAAATGCAACCGTTGTGTTGGCAAAGGCTGCAGGAACACAGTGGAGACCTGCCGTGTTGACCATGACACCTGCGGCACGGTCTTATTCAAGCCCCCACTCCCTATCTTGTACTTCAAGAGATGCATGAAGATGTCAGAATGCTTGTTGCTGGGAAGCAACAAGGACATTGATGCCTTTTGCTGCACCACCAACCAATGCAACTGAGAGACACATACTCTGTCTAACATACAATACAGTCCATTTATTGTACTAAGCTGAACATCACTAATCAATGCACATGATTGAAACTGTTAAGAAGTAACATAAAGTTTAACTTTTTTCCAAAC
>TU1751376
agaagaaggagatgaGAGTAAAGGAAGCTACACCTAAAGGAAATACAATCAGAGGGAGTCTTTGGTGATGCCTTTTTTCTATTGTCGGAACGACAGTTCAACAGACTCCTGAAGAAAGACAAAGGAAAGATGAAAGCTAGAtgtttttctctccttctcttgctGCTGGCATGTAGCTTTGGAGAGGGCCTGAAATGCAACCGTTGTGTTGGCAAAGGCTGCAGGAACACAGTGGAGACCTGCCGTGTTGACCATGACACCTGCGGCACGGTCTTATTCAAGCCCCCACTCCCTATCTTGTACTTCAAGAGATGCATGAAGATGTCAGAATGCTTGTTGCTGGGAAGCAACAAGGACATTGATGCCTTTTGCTGCACCACCAACCAATGCAACTGAGAGACACATACTCTGTCTAACATACAATACAGTCCATTTATTGTACTAAGCTGAACATCACTAATCAATGCACATGATTGAAACTGTTAAGAAGTAACATAAAGTTTAACTTTTTTCCAAAC
>TU1751377
agaagaaggagatgaGAGTAAAGGAAGCTACACCTAAAGGAAATACAATCAGGTGAGCAACTACTTTACTATCCTCAGCACCTAATAACTATGTCTCATGATACTGTGCTACTGAGGTTGTGAACTGGTTGGTTGCAGAATGTTTCTGCACATTTCAAATAAACCAGACTTACATGTAGCAATTGTTGAACATCCCACCGCATAGAGGGAGTCTTTGGTGATGCCTTTTTTCTATTGTCGGAACGACAGTTCAACAGACTCCTGAAGAAAGACAAAGGAAAGATGAAAGCTAGAtgtttttctctccttctcttgctGCTGGCATGTAGCTTTGGAGAGGGCCTGAAATGCAACCGTTGTGTTGGCAAAGGCTGCAGGAACACAGTGGAGACCTGCCGTGTTGACCATGACACCTGCGGCACGGTCTTATTCAAGCCCCCACTCCCTATCTTGTACTTCAAGAGATGCATGAAGATGTCAGAATGCTTGTTGCTGGGAAGCAACAAGGACATTGATGCCTTTTGCTGCACCACCAACCAATGCAACTGAGAGACACATACTCTGTCTAACATACAATACAGTCCATTTATTGTACTAAGCTGAACATCACTAATCAATGCACATGATTGAAACTGTTAAGAAGTAACATAAAGTTTAACTTTTTTCCAAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1751375 False 474 lncRNA 0.43 4 24540863 24541985
TU1751376 False 518 lncRNA 0.43 4 24540863 24541985
TU1751377 True 671 lncRNA 0.42 3 24540863 24541985

Neighbor

gene id symbol gene type direction distance location
LOC110495887 LOC108430494 coding upstream 15214 24520697 ~ 24525649 (+)
LOC110495888 ralbb coding upstream 63826 24472099 ~ 24477037 (+)
LOC118941069 NA coding upstream 68752 24465538 ~ 24472111 (+)
LOC110495884 LOC106574260 coding upstream 277757 24222829 ~ 24263106 (+)
LOC100653456 LOC106574258 coding upstream 319764 24210985 ~ 24221099 (+)
LOC110495890 LOC106574267 coding downstream 14252 24556237 ~ 24574771 (+)
LOC110495892 sts coding downstream 72258 24614243 ~ 24626367 (+)
LOC110495894 LOC106574269 coding downstream 533715 25075700 ~ 25097350 (+)
LOC110495895 LOC106574270 coding downstream 591225 25133210 ~ 25157338 (+)
dhrsx LOC106574274 coding downstream 655259 25197244 ~ 25229821 (+)
G1529700 NA non-coding upstream 1594 24538929 ~ 24539269 (+)
G1529657 LOC106574263 non-coding upstream 76323 24464075 ~ 24464540 (+)
G1529612 NA non-coding upstream 148217 24392403 ~ 24392646 (+)
G1529960 NA non-coding downstream 163461 24705446 ~ 24705846 (+)
G1530012 NA non-coding downstream 209671 24751656 ~ 24751945 (+)
G1530013 NA non-coding downstream 210112 24752097 ~ 24752296 (+)
G1530017 NA non-coding downstream 214227 24756212 ~ 24756490 (+)
G1530031 NA non-coding downstream 219823 24761808 ~ 24762063 (+)
G1528194 NA other upstream 1379572 23158833 ~ 23161291 (+)
LOC110497098 LOC106574424 other upstream 1929411 22599016 ~ 22641368 (+)
G1525320 NA other upstream 3783451 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 4057150 20473360 ~ 20483713 (+)
G1530367 NA other downstream 462776 25004761 ~ 25005609 (+)
G1530785 NA other downstream 1024486 25566471 ~ 25571346 (+)
G1530923 LOC106574292 other downstream 1296521 25838506 ~ 25840353 (+)
LOC110496782 LOC106575224 other downstream 1392195 25930184 ~ 25943678 (+)

Expression


Co-expression Network