G1530012


Basic Information

Item Value
gene id G1530012
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24751656 ~ 24751945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1751727
cagagtgcccaatggtggaggtggggttatggtatggataggaataagctacggacaatgaacacaattgcattttagcgatggcaatttgaatgcagagatactgtgacaagatcctgaggccattgttgtgccattcatccgccactaTCAACCTTAggtttcagtatgataatgcatggccccatgtcgcagggatctgtacacaattcctggaagctgaaaatgtcccagttcttccatagcctgcatacTTACAAGAGATGTCAGccattgagcctgtttgggat

Function

NR:

description
hypothetical protein EH28_04398

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1751727 True 290 lncRNA 0.46 1 24751656 24751945

Neighbor

gene id symbol gene type direction distance location
LOC110495892 sts coding upstream 125289 24614243 ~ 24626367 (+)
LOC110495890 LOC106574267 coding upstream 176885 24556237 ~ 24574771 (+)
LOC110495887 LOC108430494 coding upstream 226007 24520697 ~ 24525649 (+)
LOC110495888 ralbb coding upstream 274619 24472099 ~ 24477037 (+)
LOC118941069 NA coding upstream 279545 24465538 ~ 24472111 (+)
LOC110495894 LOC106574269 coding downstream 323755 25075700 ~ 25097350 (+)
LOC110495895 LOC106574270 coding downstream 381265 25133210 ~ 25157338 (+)
dhrsx LOC106574274 coding downstream 445299 25197244 ~ 25229821 (+)
LOC110495899 zbed1 coding downstream 452638 25204583 ~ 25208443 (+)
LOC110495902 LOC106574278 coding downstream 512050 25263995 ~ 25272511 (+)
G1529960 NA non-coding upstream 45810 24705446 ~ 24705846 (+)
G1529693 NA non-coding upstream 209671 24540863 ~ 24541985 (+)
G1529700 NA non-coding upstream 212387 24538929 ~ 24539269 (+)
G1530013 NA non-coding downstream 152 24752097 ~ 24752296 (+)
G1530017 NA non-coding downstream 4267 24756212 ~ 24756490 (+)
G1530031 NA non-coding downstream 9863 24761808 ~ 24762063 (+)
G1530153 NA non-coding downstream 175210 24927155 ~ 24999214 (+)
G1530175 NA non-coding downstream 203905 24955850 ~ 24956259 (+)
G1528194 NA other upstream 1590365 23158833 ~ 23161291 (+)
LOC110497098 LOC106574424 other upstream 2140204 22599016 ~ 22641368 (+)
G1525320 NA other upstream 3994244 20756691 ~ 20757412 (+)
G1524181 LOC106574559 other upstream 4267943 20473360 ~ 20483713 (+)
G1530367 NA other downstream 252816 25004761 ~ 25005609 (+)
G1530785 NA other downstream 814526 25566471 ~ 25571346 (+)
G1530923 LOC106574292 other downstream 1086561 25838506 ~ 25840353 (+)
LOC110496782 LOC106575224 other downstream 1182235 25930184 ~ 25943678 (+)

Expression


Co-expression Network