G1530971 (LOC106574270)


Basic Information

Item Value
gene id G1530971
gene name LOC106574270
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25153570 ~ 25154851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1752732
GGCGAGCGTACATTACAGGAGGCGGGCCATTGGTGATGCGAGGCAGGTACGCGATGACAATGACGGGCACGGAGAGCAGGGCGCTGCCGTACTCGTTAGCCGCTCGGCAGACGTAGGAGCCGCGGTCATAGACGGACGCCTGCTGGATGGCGAGTGTCCCATTGGCCAATACGGCGTAGCGACCGGCTCTCTGTGGCCGCCCCAGGACCACCCCACTGGGCAGGGTCCATGTCAGCCGGAGGGGGTCCCCCGTAGAGAGACAGTGGAGTTGGAGGCTCTCCCCATTCATAATACTGATGGGGGAGTTGTAGCGGTTATTGATCTCTGGTTTCCTCTCCGGGGCTAAAGTAATAGTACGTTCCACTAGCCCGGCTACATTCCTCGCCAGGCAGCGGTACATACCACTCTCAGAGACAGAGGGGTTAGTGATGACCAAGGAACCGTCAGGTCGGTGAAAGAACTTGGAGAACTGGGCACCCCTCATGAGGGGGGAACCATTAGGGAGGATCCAGGTTACTGTTGGGGGTGCTGGGCCTCTTTCAAAGGAGCAGTTCAGGGTCATGGTACTGCCTACCGTTAGAGAGAGGCTCTCTGTTTTGGGCCCACTGAGCTGCGGCCTCTCTACCATCCCTCTAACCTCCAAGTGGACTATCAGCCTGGCCTCCCCGCCCTCGTTGTGTGCGATGCAGGCCAGCTGAGCCGAGTCGGTCCCCTTCGGCGAACGTATATCCAACGTACCGTTACGATGCACCGTCATTCTGCTGCCGTAGTATGGCACCGGGAGGATGACGTTCTCCGGTAACACCCACATGACCCGGGGGATGGGTGTCCCCACAGCCTCGCAGGCCAGCATTGTTCGCTGGTCCCTTATAGCCGTCACTCTGATAGTGTTGACCATACCTCTCAGTCCGTTGATGGTCGGCGGCGTCACAAGGACTTCCACCCTGGTGACTTTGCGGTCCTGGCCGGCACTGTTCCTAGCTGTGCAGGTGTAGTTACCAGCATCAAAGCGTTGCGCCTTCTTGACCACTAATGTGCCATCATTATGGACCTGGTACTTAGTGGGGGAGGAGGAAATGGCCCAGTTAGTGGGGGGGAGCCATGTGATGACTGGGGTCGGCTCTCCCTTGGCGCTGCACTTCAGAGACACGGTCTCCCCATAAAGAACCCTGACGACTCTCGGGCTTTGAGTTTTGTCTCTGATGATCGGAGGGTCCACCACCACCTTGATGTGAACCTTCATCTCATCCTTCCCTATCTGGTTCTCAGCGTAGCAGGTATa

Function

NR:

description
matrix-remodeling-associated protein 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1752732 True 1282 lncRNA 0.58 1 25153570 25154851

Neighbor

gene id symbol gene type direction distance location
LOC110496921 hdd1a coding downstream 149437 24987741 ~ 25004133 (-)
LOC110495893 LOC106574268 coding downstream 213648 24785889 ~ 24939922 (-)
LOC110495891 pnpla4 coding downstream 524258 24620677 ~ 24629312 (-)
LOC110495885 LOC106575192 coding downstream 633667 24478315 ~ 24519903 (-)
LOC110495886 LOC106575190 coding downstream 688017 24453230 ~ 24465553 (-)
LOC110495898 cd99 coding upstream 24512 25179363 ~ 25196343 (-)
LOC110495901 LOC106574277 coding upstream 104809 25257000 ~ 25263674 (-)
LOC110495903 LOC106574275 coding upstream 117713 25272564 ~ 25278945 (-)
LOC110495905 LOC106574279 coding upstream 129104 25283955 ~ 25343499 (-)
LOC110495906 LOC106574280 coding upstream 194013 25348864 ~ 25377536 (-)
G1530966 LOC106574270 non-coding downstream 3943 25148881 ~ 25149627 (-)
G1530965 NA non-coding downstream 7980 25145206 ~ 25145590 (-)
G1530964 NA non-coding downstream 8643 25144728 ~ 25144927 (-)
G1530963 NA non-coding downstream 10062 25143217 ~ 25143508 (-)
G1530955 NA non-coding downstream 21018 25132338 ~ 25132552 (-)
G1530972 NA non-coding upstream 2033 25156884 ~ 25157124 (-)
G1530973 NA non-coding upstream 3049 25157900 ~ 25158134 (-)
G1530976 NA non-coding upstream 8980 25163831 ~ 25164035 (-)
G1530981 NA non-coding upstream 17721 25172572 ~ 25172803 (-)
G1530967 LOC106574270 other downstream 2576 25150068 ~ 25150994 (-)
G1529613 NA other downstream 759886 24393375 ~ 24393684 (-)
LOC110497104 LOC106574262 other downstream 869576 24279738 ~ 24371432 (-)
LOC110495852 LOC106574460 other downstream 1610077 23542411 ~ 23543631 (-)
LOC110495851 LOC106574449 other downstream 1612314 23479558 ~ 23541681 (-)
G1531142 NA other upstream 364570 25519421 ~ 25523180 (-)
LOC110495915 NA other upstream 418587 25571910 ~ 25574981 (-)
G1531236 NA other upstream 541688 25696539 ~ 25708874 (-)
G1533378 NA other upstream 2032771 27187622 ~ 27189549 (-)
LOC110495948 LOC106574314 other upstream 2599323 27754174 ~ 27798978 (-)

Expression


Co-expression Network