G1530662 (LOC106574282)


Basic Information

Item Value
gene id G1530662
gene name LOC106574282
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25331992 ~ 25393264 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1752397
GGGCAGGGAGTTTGAGACCAAGTGAAAACGCATTCATACACTTCTGGAGATCGGGCAGGCAGTTTGATCTGAATGAAAGATACTGTAAGAAAACGGCTGAGTATAGAGCTTCCATTCAATACAGTCTTTCTTCACAAAATAAGTGCCACTTTATGAGTCCGTTCGTCATTCAAACTGGTGGCTTTTTCCTGTTTCTGGAAGCTGGGTCCTTGCTGGTGGGTGTCACTCAGTGCAGCTGCATGGTacgtagggttgcaaaattccagtaactttggcaaaattcccaggttttaaATAAATCTAATTTGGAAAATTCCCAGGAAAATCTAGGTAAACGTGGGAATTATGGGAAAGTTACCATATTGTGCAAGGCTGCTGAAAAGGTAAGGGGAGCTACTGTGTGGGCAAAGGGATGCCTCTGGGGTCTGTGACTTGGCCTTCCTGTAGGTTCTTCACCAGCTGTGCCAACCAGCGTTTGGTGGTGGTATCGTCCTTCAGGACTTGGGCAAACGTGGTGTCTTTAAGCTGGTCTGGTAGACACTGACGGAGGGCCTCTCGGGCTCTGGTGTGGGGGCTGGAGTTGTCTGACAGGCGTAGGTAACAGCGGACAACATGTTTCAAAAGACGAGCAGAGGGCTCTTTGGAGAGCTGAAGAACCATTTTGC

Function

NR:

description
CCR4-NOT transcription complex subunit 9 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1752397 True 665 lncRNA 0.48 3 25331992 25393264

Neighbor

gene id symbol gene type direction distance location
LOC110495902 LOC106574278 coding upstream 59481 25263995 ~ 25272511 (+)
dhrsx LOC106574274 coding upstream 102171 25197244 ~ 25229821 (+)
LOC110495899 zbed1 coding upstream 123549 25204583 ~ 25208443 (+)
LOC110495895 LOC106574270 coding upstream 174654 25133210 ~ 25157338 (+)
LOC110495894 LOC106574269 coding upstream 234642 25075700 ~ 25097350 (+)
LOC110495908 ftcd coding downstream 4662 25397926 ~ 25403564 (+)
LOC110495909 LOC106574290 coding downstream 12349 25405613 ~ 25407437 (+)
sh3bp4a LOC106574293 coding downstream 465732 25858996 ~ 25884157 (+)
arl4ca LOC106574375 coding downstream 500053 25893317 ~ 25896446 (+)
LOC110496782 LOC106575224 coding downstream 536920 25930184 ~ 25943678 (+)
G1530569 LOC106574277 non-coding upstream 68960 25261026 ~ 25263032 (+)
G1530628 NA non-coding upstream 75398 25256367 ~ 25256594 (+)
G1530627 NA non-coding upstream 76213 25255237 ~ 25255779 (+)
G1530626 NA non-coding upstream 76860 25254892 ~ 25255132 (+)
G1530591 NA non-coding upstream 152948 25178682 ~ 25179044 (+)
G1530712 NA non-coding downstream 3463 25396727 ~ 25396949 (+)
G1530718 NA non-coding downstream 60584 25453848 ~ 25456024 (+)
G1530749 NA non-coding downstream 98288 25491552 ~ 25493871 (+)
G1530761 NA non-coding downstream 126266 25519530 ~ 25523293 (+)
G1530779 NA non-coding downstream 167034 25560298 ~ 25560501 (+)
G1530367 NA other upstream 326383 25004761 ~ 25005609 (+)
LOC110495887 LOC108430494 other upstream 809046 24520697 ~ 24525649 (+)
G1528194 NA other upstream 2170701 23158833 ~ 23161291 (+)
LOC110497098 LOC106574424 other upstream 2720540 22599016 ~ 22641368 (+)
G1530785 NA other downstream 173207 25566471 ~ 25571346 (+)
G1530923 LOC106574292 other downstream 445242 25838506 ~ 25840353 (+)
G1532307 NA other downstream 1364105 26757369 ~ 26757677 (+)
LOC110495947 LOC106575089 other downstream 2243276 27629477 ~ 27750060 (+)

Expression


Co-expression Network