G1530923 (LOC106574292)


Basic Information

Item Value
gene id G1530923
gene name LOC106574292
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25838506 ~ 25840353 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1752680
ACTGGTGAAAAGTATGTCCTTGTATTCATCTTTATTGATTCTCTATGTTATACTTTTAATAGCATCTCACAAAGCACAGTTCAATTTGAAAACAACTTTCATAAAAACAGAATTCAGATCAAGATATTGGATGGAATTCGTCAAAAATGTTTGGGTTCAAAATCAAACTGGAGAATACTTGTTTTACTTGCCAAACCATGTCCAATGTAGCTGATTATACATGCATTGTTAGTGATAACAATTGAACCAATTTAGAGCCGCAGAAATGCATGAGTCTATTACCTTGGGTCTTAGCTTTACAGTATAACAAGGAAAGTGCTCTATGCTTTGTTGGCAAAAGCTATTCTATGAAGTTTCAGTGCTAAAACAATTTGGTTTTGTCAACTCAGACAAGACACAGGCAATGAAACAAAGTGCCTTAACCCTTTGTAGGCAAACAGGGTATAAGAAACCTATTGAAACTAAATGGAACCAACAGGAAAAATACAAAGTTTTCATTGACATTTAAGTTGTTTTGATCAAACTAAAGTTCCTACTTCATAATTtactcgctttctctctctctcttgtttaaCTGGTGCCTAGCTACTCGTCCTCATGGTGCTCACAGAAATCATGGCAACAGACAGTTACCATGGTGATAAATGTCATGAACTCTTGGAAGTCCAATTCCGAGTCTCCATCCGTGTCCAGGCTCTCCATCAAACTGTCCATAGTGGCCTGGTCCTTCACCCCTGTAAGGGCTGGTAGCTCCTCATTGATCAAGTCTTTCAGTTCACTTTTCTTCAGTTTGTGCTTGTCCCCTTCTTTCTCTGCATACTTATGGAACACCTCCATGATGGTGGCCAGTGAACTCTCCAGATCAGTCATTGTGGTTTGTAATGCGATCTACAACGTAGAGCAAAAAAGCATTTCATCTCTAGGCCTAGCATGTGACATAAACAACAGGG
>TU1752681
ACTGGTGAAAAGTATGTCCTTGTATTCATCTTTATTGATTCTCTATGTTATACTTTTAATAGCATCTCACAAAGCACAGTTCAATTTGAAAACAACTTTCATAAAAACAGAATTCAGATCAAGATATTGGATGGAATTCGTCAAAAATGTTTGGGTTCAAAATCAAACTGGAGAATACTTGTTTTACTTGCCAAACCATGTCCAATGTAGCTGATTATACATGCATTGTTAGTGATAACAATTGAACCAATTTAGAGCCGCAGAAATGCATGAGTCTATTACCTTGGGTCTTAGCTTTACAGTATAACAAGGAAAGTGCTCTATGCTTTGTTGGCAAAAGCTATTCTATGAAGTTTCAGTGCTAAAACAATTTGGTTTTGTCAACTCAGACAAGACACAGGCAATGAAACAAAGTGCCTTAACCCTTTGTAGGCAAACAGGGTATAAGAAACCTATTGAAACTAAATGGAACCAACAGGAAAAATACAAAGTTTTCATTGACATTTAAGTTGTTTTGATCAAACTAAAGTTCCTACTTCATAATTtactcgctttctctctctctcttgtttaaCTGGTGCCTAGCTACTCGTCCTCATGGTGCTCACAGAAATCATGGCAACAGACAGTTACCATGGTGATAAATGTCATGAACTCTTGGAAGTCCAATTCCGAGTCTCCATCCGTGTCCAGGCTCTCCATCAAACTGTCCATAGTGGCCTGGTCCTTCACTTGCCTGTAAGGGCTGGTAGCTCCTCATTGATCAAGTCTTTCAGTTCACTTTTCTTCAGTTTGTGCTTGTCCCCTTCTTTCTCTGCATACTTATGGAACACCTCCATGATGGTGGCCAGTGAACTCTCCAGATCAGTCATTGTGGTTTGTAATGCGATCTACAACGTAGAGCAAAAAAGCATTTCATCTCTAGGCCTAGCATGTGACATAAACAACAGGG
>TU1752682
ACTGGTGAAAAGTATGTCCTTGTATTCATCTTTATTGATTCTCTATGTTATACTTTTAATAGCATCTCACAAAGCACAGTTCAATTTGAAAACAACTTTCATAAAAACAGAATTCAGATCAAGATATTGGATGGAATTCGTCAAAAATGTTTGGGTTCAAAATCAAACTGGAGAATACTTGTTTTACTTGCCAAACCATGTCCAATGTAGCTGATTATACATGCATTGTTAGTGATAACAATTGAACCAATTTAGAGCCGCAGAAATGCATGAGTCTATTACCTTGGGTCTTAGCTTTACAGTATAACAAGGAAAGTGCTCTATGCTTTGTTGGCAAAAGCTATTCTATGAAGTTTCAGTGCTAAAACAATTTGGTTTTGTCAACTCAGACAAGACACAGGCAATGAAACAAAGTGCCTTAACCCTTTGTAGGCAAACAGGGTATAAGAAACCTATTGAAACTAAATGGAACCAACAGGAAAAATACAAAGTTTTCATTGACATTTAAGTTGTTTTGATCAAACTAAAGTTCCTACTTCATAATTtactcgctttctctctctctcttgtttaaCTGGTGCCTAGCTACTCGTCCTCATGGTGCTCACAGAAATCATGGCAACAGACAGTTACCATGGTGATAAATGTCATGAACTCTTGGAAGTCCAATTCCGAGTCTCCATCCGTGTCCAGGCTCTCCATCAAACTGTCCATAGTGGCCTGGTCCTTCACTTGCTGAGGGCCCTGTAAGGGCTGGTAGCTCCTCATTGATCAAGTCTTTCAGTTCACTTTTCTTCAGTTTGTGCTTGTCCCCTTCTTTCTCTGCATACTTATGGAACACCTCCATGATGGTGGCCAGTGAACTCTCCAGATCAGTCATTGTGGTTTGTAATGCGATCTACAGTGAGTCTCGGACTGGAACAAAGGTGATTTGCGGATGAGAGTGAGTAGTGGCTGTGGAGGGACAAAGAGTATAGGCTTTTATAGTTGGTGTGGGGAGGGCCTAGTGCCTCTGGTCAACCACCC

Function

NR:

description
PREDICTED: protein S100-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1752680 False 950 TUCP 0.39 2 25838506 25839735
TU1752681 False 952 TUCP 0.39 2 25838506 25839735
TU1752682 True 1026 lncRNA 0.40 3 25838506 25840353

Neighbor

gene id symbol gene type direction distance location
LOC110495909 LOC106574290 coding upstream 431069 25405613 ~ 25407437 (+)
LOC110495908 ftcd coding upstream 434942 25397926 ~ 25403564 (+)
LOC110495902 LOC106574278 coding upstream 565995 25263995 ~ 25272511 (+)
dhrsx LOC106574274 coding upstream 608685 25197244 ~ 25229821 (+)
sh3bp4a LOC106574293 coding downstream 18643 25858996 ~ 25884157 (+)
arl4ca LOC106574375 coding downstream 52964 25893317 ~ 25896446 (+)
LOC110496782 LOC106575224 coding downstream 89831 25930184 ~ 25943678 (+)
bzw1a LOC106574295 coding downstream 121364 25961717 ~ 25973319 (+)
kynu LOC106575231 coding downstream 412768 26253121 ~ 26267132 (+)
G1530909 NA non-coding upstream 16267 25821915 ~ 25822239 (+)
G1530890 NA non-coding upstream 41395 25796876 ~ 25797111 (+)
G1530853 NA non-coding upstream 67802 25769898 ~ 25770704 (+)
G1530832 NA non-coding upstream 203833 25634205 ~ 25634673 (+)
G1530822 NA non-coding upstream 215191 25623102 ~ 25623315 (+)
G1531332 NA non-coding downstream 51943 25892296 ~ 25892932 (+)
G1531446 NA non-coding downstream 190372 26030725 ~ 26031545 (+)
G1531450 NA non-coding downstream 196538 26036891 ~ 26037165 (+)
G1531582 NA non-coding downstream 428476 26268829 ~ 26270336 (+)
G1531595 NA non-coding downstream 466545 26306898 ~ 26307114 (+)
G1530785 NA other upstream 267160 25566471 ~ 25571346 (+)
LOC110495895 LOC106574270 other upstream 682611 25133210 ~ 25157338 (+)
G1530367 NA other upstream 832897 25004761 ~ 25005609 (+)
LOC110495887 LOC108430494 other upstream 1315560 24520697 ~ 24525649 (+)
G1528194 NA other upstream 2677215 23158833 ~ 23161291 (+)
G1532307 NA other downstream 917016 26757369 ~ 26757677 (+)
LOC110495947 LOC106575089 other downstream 1796187 27629477 ~ 27750060 (+)
LOC110495958 LOC106574318 other downstream 2106725 27943362 ~ 27958807 (+)
G1533121 LOC106574322 other downstream 2134460 27974813 ~ 28038476 (+)

Expression


Co-expression Network