XLOC_000346 (BX908780.2)


Basic Information

Item Value
gene id XLOC_000346
gene name BX908780.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 29311527 ~ 29312559 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000595
attgtttttatacaaaacaaacaaataccaaatgtattttactgtattttccccacaaatacAGTTTACACAGAGTTCATACCAACCAACACAAAGTAGCAGATAACGTGGTCTACATATACCgtcaacagaagtatttactgaatccagtcacagtaaaaaaaaaaaataataaaataaataaacagctatactgcatcctcttttctgttttggtctggccaagcagtgggggaaatgtcaccttgcatggcgaatccagccacgaaaagcatcaactgctatggCTTGGAGAAGGGGTGTGTGTGGATTTCGTGCATACACTTTACATCTCCAGGCAGAAAATaaatcctcaataggtttgagggatggagaatatggagggggagataaacaactaaaaaacatgggTGGGCAGTAAATCAGTTATGAATCAGATAAGCTCTAATTTCTAAATTGCAATTTtgtgtgacaggtgtttactcatgtgataaGTTAtaatgcaaagtagaaaaactgactttacaattgtgaatgacagtgttttccttctgaaaacaaaagattttctgcatgaaaattgtgcaaaatgcagagaattgaaGGTTGTGTTTTGACAAAAAGTGTGTTTgaaacctgcaatttgagtgtaaagcaggaattgtgcttgtagttaaGCAGAATTGGATAAGGGGGTTTGggcatcagttacatgttgtagtcattgtgtctgaagtacaagttatagtgtgtaaacaattggaaaaaactgtaata

Function

GO:

id name namespace
GO:0018958 phenol-containing compound metabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:1901615 organic hydroxy compound metabolic process biological_process
GO:0009712 catechol-containing compound metabolic process biological_process
GO:0006584 catecholamine metabolic process biological_process
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096592

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000595 True 777 lncRNA 0.36 2 29311527 29312559

Neighbor

gene id symbol gene type direction distance location
XLOC_000344 lig4 coding upstream 40054 29267841 ~ 29271473 (+)
XLOC_000343 irs2a coding upstream 83134 29211540 ~ 29228393 (+)
XLOC_000342 cars2 coding upstream 108838 29183962 ~ 29202689 (+)
XLOC_000340 BX908780.5 coding upstream 130879 29174195 ~ 29180648 (+)
XLOC_000347 CT573186.1 coding downstream 131893 29444452 ~ 29445719 (+)
XLOC_000348 CT573186.2 coding downstream 138906 29451465 ~ 29452733 (+)
XLOC_000349 NA coding downstream 187749 29500308 ~ 29501034 (+)
XLOC_000350 CR774189.1 coding downstream 195088 29507647 ~ 29508473 (+)
XLOC_000351 si:dkey-228l14.1 coding downstream 202601 29515160 ~ 29519002 (+)
XLOC_000336 CU469541.1 non-coding upstream 406892 28903770 ~ 28904635 (+)
XLOC_000335 NA non-coding upstream 838114 28472199 ~ 28473413 (+)
XLOC_000327 NA non-coding upstream 2570378 26740115 ~ 26741149 (+)
XLOC_000325 NA non-coding upstream 2640317 26664689 ~ 26671210 (+)
XLOC_000358 NA non-coding downstream 762076 30074635 ~ 30079529 (+)
XLOC_000341 si:ch211-198k9.6 coding upstream 131593 29178117 ~ 29179934 (+)

Expression


Co-expression Network