XLOC_003460 (sulf2a)


Basic Information

Item Value
gene id XLOC_003460
gene name sulf2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24907469 ~ 24993225 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006775
ATGGCAGTCACGCGAGGACACATCCCCTCTATCTGAAGGTTGACAAAAAACTGCGACCTTACTAGTAAGTGTGGGAGGTGGAGCACTGGTTAAGGTCATGGCAGTAGGGTGGAGACCGGCCACCCTTCTCCTAGTCTTCATCCTGACGTTCATCTGTCTTTCGGATGGATCCACGTACCTCTCTGGCCAAAGACAGAGGTCTCGTCTTCAGAGAGATCGGCGAAACGTTCGACCAAACATGATTCTCATTCTTACTGATGACCAGGACATTGAACTTGGCTCCATGCAGGCCATGAACAAAACAAAGCGCATAATGATGCAAGGCGGCACTCATTTCTCCAATGCATTTGCAACCACTCCGATGTGCTGCCCGTCTCGATCCACCATCCTGACTGGGAAATATGTGCACAACCACCACACATACACCAACAACGAAAACTGCTCATCACCGTCCTGGCAGGCCCATCATGAACCACACACGTTTGCCGTGCACCTCAACAATTCAGGCTACAGGACGGCATTCTTTGGGAAGTATCTGAATGAGTACAATGGCTCTTATGTTCCTCCTGGCTGGAGAGAATGGGTAGCACTGGTGAAGAACTCTCGTTTCTACAACTACACACTGTGCAGGAATGGAATCAGGGAAAAGCATGGCACACAGTACCCAAAGGACTATCTCACTGACGTTATCACAAACGACAGCATCAACTACTTTCGTATGTCAAAGCGAATGTACCCTCACAGACCTGTGATGATGGTTCTGAGCCACGCTGCCCCTCATGGACCGGAGGACGCAGCGCCTCAATACAGCAGCGCTTTCCCCAATGCATCGCAACACATAACCCCAAGCTACAACCACGCACCCAACCCAGACAAGCACTGGATCCTGCGTTACACGGGACCCATGAAGCCTGTACACATGCAGTTCACCAATATGCTGCAGAGACGAAGACTGCAAACCCTGCTTTCAGTGGATGACAGCGTTGAGAAGGTCTACAATATGTTGGTGGAAACTGGGGAGCTGGACAACACCTACATCATTTACATGTCTGATCATGGCTATCACATTGGTCAGTTTGGGTTGGTCAAAGGCAAATCAATGCCATATGAGTTTGACATTCGAATCCCCTTCTACGTGCGAGGGCCCAACGTGGAAGCTGGTGCCATTAATCCTCACATAGTCCTGAACACTGACCTTGCTCCTACCTTGCTGGATATGGCTGGGATTGACATTCCACAGGACATGGATGGCAAGTCCATTCTCAAGCTGTTAGAAACAGAAAGACCAGTTAACAGTTTCACCAGGTTTCATTCGTACAAGAAGGCAAAATTGTGGCGGGATTCTTTCCTGGTAGAAAGAGGGAAGCCACTGCATAAACTAGCAGATGGCAAAGAGGTGGAACAGAATTCGCTGCCAAAGTATCAGCGGGTCAGAGACCTGTGTCAAAGAGCCGAGTACCAGACGCCCTGCGAGCAGCCAGGCCAGAAGTGGCAGTGTATTGAGGATGGCACTGGCATGCCAAGACTGTATAAGTGTAAGGGTATGGCGGGCCTCTTTGCACCTCGAGCTCTCGGCCTGATGGCTGCCAACAGAGGACAGATCAGTGCTGCTCATCCTGGTTCAGACTACTGTGATTGTGAACCCGCAGCGCCTCTCAAGAGGAAGAAAGCACTCACTAAGAAGAAACTGAAGAACAAAAAGAGTGTACCACGGAATCGCTGGGCCCGCTCTGTCCCCTATCATTTGGACTCAAATGTGTACACTTTGGACCTGGAGAAGGGCTACCGTCCCCTCAACCTCAACACCAGCCTCATGCTAGGCAGAAAGCAGGCGGTGTATGGACAGAATGAAGAATATAGCGGCATGGGGCCCACAGAAGACAACTTCAACTCCCTCACGCCACCTGCTGCTCTTAAAGTCACCTACAGATGCTCAATACTAATGAATGACACAGTTAAATGTGATGGTGGATTATATAAATCTCTACAAGCATGGAAAGATCACAAACTACACATTGAGCATGAGATTGAGACACTGCAAACCAAAATAAAGAACCTCAGAGAGGTTAAAGGACATCTAAAGGAGGTTCGACCAAAAGAGTGTGAATGCAACAAAAACATgtatcaGTACAGCAGCAGAGCACTGTTTAAACTCAAATCAGCCCAGACACATTCTGTCAAAATGACCTCCAAAGATAAGAAACAGTGGCTGATGAAAGAGCAGAAGCGCAGGAAGAAGCTGAGGAAACTCCTGAAGCGTCTGCGTAATAATGACACTTGCAGCATGCCTGGGCTCACCTGCTTCACTCACGACAACCAGCACTGGCAGACCGCCCCCTTCTGGACAATGGGGCCTTTTTGTGCTTGCACGAGTGCAAATAATAACACTTACTGGTGTCTGAGGACTATCAATGAGACACACAACTTCCTGTTCTGTGAGTTTGCCACTGGATTCCTGGAGTATTTTGACCTTAACACAGATCCTTATCAGCTGATGAATGGCGTGAGCACACTGGATCGTGATGCGGTTAATCACATGCACCAGCAGCTCATGAAACTGCGCAGCTGCAAAGGTCACAAAGAGTGCAATCAGGAGACAGGTGGTAAAGAGAGAAACACGTTGTACGATTACAGGCCCCTTCATCGTCGAAAGAGGCCAAAAGTGAAGAAAGCATCCTCCAAATCAATGGGCCAGATTTGGGAAGGATGGGTTGGTTAGACCGATCTCTGCTATCCGCTGTGAAGGATGTGCAGAGGTGAGGAATGTGAACCGATGAACTCCTGACCCGAGGACAGCATAAACTCTTCAAACGTCCAGCTATAATCAAGTGAGGATCAGCACGGTTTTCTCTCAAAATGAAAACTTTTTCTATTCACTTTTTTTTGACCCACTACTTTATTCGTGAACTTTTTAATGACCTTTTCTCTCCTggattttttaatgaacttttttttttaaatggggcaCTCTCTATCCGACCAAGCACCTAACATTTTGTGGCTGAGATTGATCAACTTCACGACTCTCATAAGACAAGAACACTCATATGGCTCATCATCAGATTTTTTCCTTTATTATTCCTGTAAGACTGTGATGTGGGACTCTGATACTGTGTTACAAACAGGGCCGCTGTGTGCCCTGACTTCTCTGCTGCTGTGGATACTGTAATATTACTCTCAAAGTGAATATTCCAAGGAAACGTCATGATACTTTACACACATTGTGCTGTAGTGTATGATATTAATGTCATCTGCAACAACAGTATGTAATTCTGTTCATGTTGCTTTCTGAAACATGGTGCTACTGTAAGTTAACACTTGGAACTGAATGCTGCATAGTATGTATTTTGAATGTATGTGcaattaatgtaaatattagtgTATTTTTGCCAGACTGAACAAACGGGAGTAAGGAGAGCGGCCTCAGAAAAACCCTCAGTCTAACAAAGGTTTGACGTTTATCTGAATGCACTTATGAGTAACATACTAAACGGTGTTTGAGTAATGACGTGTTATTAATAGTTATGAAATTTCGGATATCTGTGTAGTTGTCATCACAAGCCAGTTCTGTCATTTTTGCTGTTTTCCTTTGCCTTGAAATGTGGAAAACAATTAAGGTGTAGTAGTTgttgaataaaaaatttaaataca
>TCONS_00006776
TTGTGTGGCTGACAGAGGGGGAGTCGAGTCAGAGGTGGTCTTTCGAGGACCGAACAGGTGACGGATCTTTGTATGCCAGAGTTTGAAGGCTTCTATAGTTTTGCTGTTCCTCGGGAAGGATTCAGAGGTGGGAATCAGTGAGGTTGACAAAAAACTGCGACCTTACTAGTAAGTGTGGGAGGTGGAGCACTGGTTAAGGTCATGGCAGTAGGGTGGAGACCGGCCACCCTTCTCCTAGTCTTCATCCTGACGTTCATCTGTCTTTCGGATGGATCCACGTACCTCTCTGGCCAAAGACAGAGGTCTCGTCTTCAGAGAGATCGGCGAAACGTTCGACCAAACATGATTCTCATTCTTACTGATGACCAGGACATTGAACTTGGCTCCATGCAGGCCATGAACAAAACAAAGCGCATAATGATGCAAGGCGGCACTCATTTCTCCAATGCATTTGCAACCACTCCGATGTGCTGCCCGTCTCGATCCACCATCCTGACTGGGAAATATGTGCACAACCACCACACATACACCAACAACGAAAACTGCTCATCACCGTCCTGGCAGGCCCATCATGAACCACACACGTTTGCCGTGCACCTCAACAATTCAGGCTACAGGACGGCATTCTTTGGGAAGTATCTGAATGAGTACAATGGCTCTTATGTTCCTCCTGGCTGGAGAGAATGGGTAGCACTGGTGAAGAACTCTCGTTTCTACAACTACACACTGTGCAGGAATGGAATCAGGGAAAAGCATGGCACACAGTACCCAAAG
>TCONS_00006777
GGAGGATTTGTTTGGATGGGAATGTCCAGGGATGAGCAGTGCATGGTGTTTGTTGATGAaggtttttgctgtttgtttggaTGGGTGAAGTTTGTTTGGTCACCTTTAACCTGAGAACCGCAGGGTGTCTGGATCTACAGTGCAACAGGATTCCACTTTTCTGAGGTTGACAAAAAACTGCGACCTTACTAGTAAGTGTGGGAGGTGGAGCACTGGTTAAGGTCATGGCAGTAGGGTGGAGACCGGCCACCCTTCTCCTAGTCTTCATCCTGACGTTCATCTGTCTTTCGGATGGATCCACGTACCTCTCTGGCCAAAGACAGAGGTCTCGTCTTCAGAGAGATCGGCGAAACGTTCGACCAAACATGATTCTCATTCTTACTGATGACCAGGACATTGAACTTG
>TCONS_00006778
CATGGCAGTAGGGTGGAGACCGGCCACCCTTCTCCTAGTCTTCATCCTGACGTTCATCTGTCTTTCGGATGGATCCACGTACCTCTCTGGCCAAAGACAGAGGTCTCGTCTTCAGAGAGATCGGCGAAACGTTCGACCAAACATGATTCTCATTCTTACTGATGACCAGGACATTGAACTTGGCTCCATGCAGGCCATGAACAAAACAAAGCGCATAATGATGCAAGGCGGCACTCATTTCTCCAATGCATTTGCAACCACTCCGATGTGCTGCCCGTCTCGATCCACCATCCTGACTGGGAAATATGTGCACAACCACCACACATACACCAACAACGAAAACTGCTCATCACCGTCCTGGCAGGCCCATCATGAACCACACACGTTTGCCGTGCACCTCAACAATTCAGGCTACAGGACGGCATTCTTTGGGAAGTATCTGAATGAGTACAATGGCTCTTATGTTCCTCCTGGCTGGAGAGAATGGGTAGCACTGGTGAAGAACTCTCGTTTCTACAACTACACACTGTGCAGGAATGGAATCAGGGAAAAGCATGGCACACAGTACCCAAAGGACTATCTCACTGACGTTATCACAAACGACAGCATCAACTACTTTCGTATGTCAAAGCGAATGTACCCTCACAGACCTGTGATGATGGTTCTGAGCCACGCTGCCCCTCATGGACCGGAGGACGCAGCGCCTCAATACAGCAGCGCTTTCCCCAATGCATCGCAACACATAACCCCAAGCTACAACCACGCACCCAACCCAGACAAGCACTGGATCCTGCGTTACACGGGACCCATGAAGCCTGTACACATGCAGTTCACCAATATGCTGCAGAGACGAAGACTGCAAACCCTGCTTTCAGTGGATGACAGCGTTGAGAAGGTCTACAATATGTTGGTGGAAACTGGGGAGCTGGACAACACCTACATCATTTACATGTCTGATCATGGCTATCACATTGGTCAGTTTGGGTTGGTCAAAGGCAAATCAATGCCATATGAGTTTGACATTCGAATCCCCTTCTACGTGCGAGGGCCCAACGTGGAAGCTGGTGCCATTAATCCTCACATAGTCCTGAACACTGACCTTGCTCCTACCTTGCTGGATATGGCTGGGATTGACATTCCACAGGACATGGATGGCAAGTCCATTCTCAAGCTGTTAGAAACAGAAAGACCAGTTAACAGTTTCACCAGGTTTCATTCGTACAAGAAGGCAAAATTGTGGCGGGATTCTTTCCTGGTAGAAAGAGGGAAGCCACTGCATAAACTAGCAGATGGCAAAGAGGTGGAACAGAATTCGCTGCCAAAGTATCAGCGGGTCAGAGACCTGTGTCAAAGAGCCGAGTACCAGACGCCCTGCGAGCAGCCAGGCCAGAAGTGGCAGTGTATTGAGGATGGCACTGGCATGCCAAGACTGTATAAGTGTAAGGGTATGGCGGGCCTCTTTGCACCTCGAGCTCTCGGCCTGATGGCTGCCAACAGAGGACAGATCAGTGCTGCTCATCCTGGTTCAGACTACTGTGATTGTGAACCCGCAGCGCCTCTCAAGAGGAAGAAAGCACTCACTAAGAAGAAACTGAAGAACAAAAAGAGTGTACCACGGAATCGCTGGGCCCGCTCTGTCCCCTATCATTTGGACTCAAATGTGTACACTTTGGACCTGGAGAAGGGCTACCGTCCCCTCAACCTCAACACCAGCCTCATGCTAGGCAGAAAGCAGGCGGTGTATGGACAGAATGAAGAATATAGCGGCATGGGGCCCACAGAAGACAACTTCAACTCCCTCACGCCACCTGCTGCTCTTAAAGTCACCTACAGATGCTCAATACTAATGAATGACACAGTTAAATGTGATGGTGGATTATATAAATCTCTACAAGCATGGAAAGATCACAAACTACACATTGAGCATGAGATTGAGACACTGCAAACCAAAATAAAGAACCTCAGAGAGGTTAAAGGACATCTAAAGGAGGTTCGACCAAAAGAGTGTGAATGCAACAAAAACATgtatcaGTACAGCAGCAGAGCACTGTTTAAACTCAAATCAGCCCAGACACATTCTGTCAAAATGACCTCCAAAGATAAGAAACAGTGGCTGATGAAAGAGCAGAAGCGCAGGAAGAAGCTGAGGAAACTCCTGAAGCGTCTGCGTAATAATGACACTTGCAGCATGCCTGGGCTCACCTGCTTCACTCACGACAACCAGCACTGGCAGACCGCCCCCTTCTGGACAATGGGGCCTTTTTGTGCTTGCACGAGTGCAAATAATAACACTTACTGGTGTCTGAGGACTATCAATGAGACACACAACTTCCTGTTCTGTGAGTTTGCCACTGGATTCCTGGAGTATTTTGACCTTAACACAGATCCTTATCAGCTGATGAATGGCGTGAGCACACTGGATCGTGATGCGGTTAATCACATGCACCAGCAGCTCATGAAACTGCGCAGCTGCAAAGGTCACAAAGAGTGCAATCAGGAGACAGGTGGTAAAGAGAGAAACACGTTGTACGATTACAGGCCCCTTCATCGTCGAAAGAGGCCAAAAGTGAAGAAAGCATCCTCCAAATCAATGGGCCAGATTTGGGAAGGATGGGTTGGTTAGACCGA
>TCONS_00006779
ATGCTCAATACTAATGAATGACACAGTTAAATGTGATGGTGGATTATATAAATCTCTACAAGCATGGAAAGATCACAAACTACACATTGAGCATGAGATTGAGACACTGCAAACCAAAATAAAGAACCTCAGAGAGGTTAAAGGACATCTAAAGGAGGTTCGACCAAAAGAGTGTGAATGCAACAAAAACATgtatcaGTACAGCAGCAGAGCACTGTTTAAACTCAAATCAGCCCAGACACATTCTGTCAATAGAATGACCTCCAAAGATAAGAAACAGTGGCTGATGAAAGAGCAGAAGCGCAGGAAGAAGCTGAGGAAACTCCTGAAGCGTCTGCGTAATAATGACACTTGCAGCATGCCTGGGCTCACCTGCTTCACTCACGACAACCAGCACTGGCAGACCGCCCCCTTCTGGACAAGTACTGCATTACATGCCACAGCTCTTCTTTCAGATATcacataaaaaactatttaaatgagaCATGACTTTTGAAATTAAAGTTGCCTTGATCTTTTTACATATAAGAGGTTTCCACTAAAACATCCTAAAAAACGTTTTAAAAGAACTTTCGCTTTGAC

Function

symbol description
sulf2a Predicted to enable N-acetylglucosamine-6-sulfatase activity and glycosaminoglycan binding activity. Acts upstream of or within with a positive effect on epithelial structure maintenance. Predicted to be located in Golgi stack and extracellular space. Predicted to be active in cell surface; endoplasmic reticulum; and plasma membrane. Is expressed in several structures, including central nervous system; head; hypochord; neural plate; and neural tube. Orthologous to human SULF2 (sulfatase 2).

GO:

id name namespace
GO:0032836 glomerular basement membrane development biological_process
GO:0060348 bone development biological_process
GO:0014846 esophagus smooth muscle contraction biological_process
GO:0060384 innervation biological_process
GO:0010669 epithelial structure maintenance biological_process
GO:0030177 positive regulation of Wnt signaling pathway biological_process
GO:0002063 chondrocyte development biological_process
GO:0030201 heparan sulfate proteoglycan metabolic process biological_process
GO:0035860 glial cell-derived neurotrophic factor receptor signaling pathway biological_process
GO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0010575 positive regulation of vascular endothelial growth factor production biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005795 Golgi stack cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0009986 cell surface cellular_component
GO:0008449 N-acetylglucosamine-6-sulfatase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0005539 glycosaminoglycan binding molecular_function
GO:0008484 sulfuric ester hydrolase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004065 arylsulfatase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-759 Predicted to enable N-acetylglucosamine-6-sulfatase activity and glycosaminoglycan binding activity. Acts upstream of or within with a positive effect on epithelial structure maintenance. Predicted to be located in Golgi stack and extracellular space. Predicted to be active in cell surface; endoplasmic reticulum; and plasma membrane. Is expressed in several structures, including central nervous system; head; hypochord; neural plate; and neural tube. Orthologous to human SULF2 (sulfatase 2).

Ensembl:

ensembl_id ENSDARG00000018423

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006775 False 3651 mRNA 0.46 21 24907469 24993225
TCONS_00006776 False 774 mRNA 0.50 4 24925434 24969657
TCONS_00006777 False 405 mRNA 0.48 2 24957858 24966363
TCONS_00006778 False 2628 mRNA 0.49 20 24966182 24992298
TCONS_00006779 True 582 processed_transcript 0.40 4 24980919 24983498

Neighbor

gene id symbol gene type direction distance location
XLOC_003459 timm17a coding upstream 1205 24900123 ~ 24906264 (+)
XLOC_003458 lmod1b coding upstream 12562 24889170 ~ 24894907 (+)
XLOC_003457 shisa4 coding upstream 18874 24877820 ~ 24888595 (+)
XLOC_003456 ipo9 coding upstream 30848 24851671 ~ 24876621 (+)
XLOC_003455 kdm5ba coding upstream 56005 24819324 ~ 24851464 (+)
XLOC_003461 zgc:92107 coding downstream 1480 24994705 ~ 25043214 (+)
XLOC_003462 phf20a coding downstream 50857 25044082 ~ 25063586 (+)
XLOC_003463 NA coding downstream 66237 25059462 ~ 25060098 (+)
XLOC_003464 ndrg3a coding downstream 71294 25064519 ~ 25155003 (+)
XLOC_003465 trpc4apa coding downstream 164149 25157374 ~ 25180330 (+)
XLOC_003369 CR854846.2 misc upstream 8784387 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12195473 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12213206 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12221870 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12227441 12679732 ~ 12680028 (+)
XLOC_003447 BX072564.1 non-coding upstream 326355 24580579 ~ 24581114 (+)
XLOC_003442 NA non-coding upstream 596824 24120291 ~ 24310645 (+)
XLOC_003444 AL831791.1 non-coding upstream 728531 24178823 ~ 24178938 (+)
XLOC_003443 NA non-coding upstream 729818 24176418 ~ 24177651 (+)
XLOC_003441 FP102969.1 non-coding upstream 756252 24116083 ~ 24151217 (+)
XLOC_003466 NA non-coding downstream 188632 25181857 ~ 25228195 (+)
XLOC_003467 NA non-coding downstream 263587 25256812 ~ 25266235 (+)
XLOC_003487 NA non-coding downstream 836145 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 1084722 26077947 ~ 26078061 (+)

Expression


Co-expression Network