G1533388


Basic Information

Item Value
gene id G1533388
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27196603 ~ 27207572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1755370
TCAAGACAGTCAAGATAACACTAGCCAAGAAACAATAAGGTGCTGCTTGGATATTGTTTAGTACTATTTAAGTATTAAGGAAGCAATAGAGAAGTTTTGAGATGATGGCCAATGTTTTTTTCATGGTTTTGTTTGTCCTTTCAACATTCCGAGGTAAATATTCTCTGAACCTAACCGAACCTTGTAAGAATGGAACCACTGGAACAACAGATGTAAAAAAGCTTGAACGTCTTGGCTTTATTCGACTGTCTATCACGTGTCTGGGTTTGTCGATCATGCTCATTCTCTCATATGCTGTCATCACCCTCCTTCACAAACTGAAGATACACAGGTCCCTGGTATGCGTGAGAAGAAAGTAGGCAGAGGGCACAGAAGCTACAAAGAGAAGATCAACTCAATCTACATGCTCATGCCTGACAAATTACCAGCACAGGGAGCAGGACATGACCTTTGACCTGGAAGGTCTCTATCTGGGTGCGTCCCAAAAGCATCCACACTTGTACTTTCCGATCACTTTATATGGTGTCTAAATTAGTTTGCTATAGCCTGTTAATGGAATGCTGCACAAGGTCCACCTTATGGCAACACCTTTATGTACACCACCCACAGACTGTGCCATATAAAAACACCCTTTGGATAATAGTAGAGAAAGAATGCgtctgctaaatggcatatattattattatgttacgAAACTCTCATTATGTGGTCATATGGCTCATCATGTGAACATATGAACATACAAGGAGGAATGTCATACCTCACACACACCAAATTGATATGTGCAATCTATGCTCTAGACTGCTTGGCCACTTGGAGTCAAGTCTTCAGTTTTAATCAGCTTTTAGACAAGTTAAGGCACACAGTATGCATTTGCAGTCCCACGAGCTAGCTCACAGTGTAGCAAGCCTGGCTCCTGAAAATGGTCACAGTTTGTGGCCAGGGCTTGAATCCCAGATGAGATATTATTTTAACACTTTATACTGTAGAATTATAAttattgtgttagtgtgttgcGAAGGGAAGTGCAGCCAACGCCTTGAAAAGATGAAGAATAAACGTAATGAGGAGCTACGTCTTTCTTCAGCCATATAGACAAAAATACATGGCTAATAATGATGTTTattgtataggctatattacatagaCGTGTACACTTAAATGTAGAATATATTAAATGCATTATTATAATAATCCTCCACTtcgtcacatgtgcaaccagaagtGAATCTTTTTTCCCTCTAACGCCCAGTTACTGCAACCCAAAGATTCTGAGTTTACCGCCTTAGTGGTGTATTCCACCTGGCAGCCTtaacactgcgccactcaggaggcacATGCCAGTTATCTGACAAGGCCATTAACCTCTTtgacttaaaaaaaacaaaacaatgtacAAATATAAATTGTCATGTTGTATAGACCTATGTATTTATCTTTTAAAAACGTGTGTGAAACGGATACGCAAACAGGTGGAATTTTATTgtacagatgtcggatcttaatttgagcctgtTTCATAGCAGgaggaaataatcctgcagcaggagGGTTTGAATAGCTGAAGAAGTATTTATACATAGCCTAACTATAAAACAGGGGTGAGCATGAAGTTTATCGTTCTACTTAGTAGACCTACATCTGTCAATCAACTGATGGGCCAAATCATCTCAACACCACCTTTCATTATATGTTTAGGCTAACGGGTAGCCGACAGAACACTTTGGATAAatgcgtctgctaaatggcatacatTTTATTATTGGGATATAATCAAATAACAAGGGGCCTGTTGCAACCATCTATGGCACTAGATGAACCATCAACGGCACGAGATTATCGCTAGCTGAtgttttgttaaatcatcacttCGTGTGAAATTCACCCACAAAACTGATCTCAATTGCAGCCATTATTGGTCACATCATTACTGCTCAATAAAAGATTATGTAAGTgttactgtcacgtcctgaccttagttccttttttacgtctctattttggtttggtcagggcgtgagttggggtgggaattGTTGTTAATTCTATGTTTTATTCTGTGtggtgtatttctgtgtttggcctggtatggttcccaatcagaggcaatcgttgtctctgattgagaaccatacttaggtagcctgttcccacctgtgtttgggggtagttgttttctgtctctgtaccaaacagaactgttttgtgttggtctatttttattattttgtcttagtggtctgagttaaaataaatattaacataaacacttaccacgctgcgttttggtccgatcttgactactcttcATCAGACGAAGAGGATCATTACAGTTACCTCAGTCCTTCTTGCAACCAAAGTCCTTTAAGATATGTTCAccctctggttggtattatcttcGGAACTATTTAGTCCTTTTTAACAGGCTAAGGGTGATTTATCTAGTGGACAAGCATTCCATACAACATAAATCAAGTATTTGCTCATttaccactgcaaatctactgtGGCAATTTACCCGACACTTTGTATGAATGAAAACTTTTGGTGTAGCctgttattatttttatttgtgttAGCCATTAAAATACTACT
>TU1755371
aaaacaatGTACAATGTTGTATAGACCTATGTATTTATCTTTTAAAAACGTGTGTGAAACGGATACGCAAACAGGTGGAATTTTATTgtacagatgtcggatcttaatttgagcctgtTTCATAGCAGgaggaaataatcctgcagcaggagGGTTTGAATAGCTGAAGAAGTATTTATACATAGCCTAACTATAAAACAGGGGTGAGCATGAAGTTTATCGTTCTACTTAGTAGACCTACATCTGTCAATCAACTGATGGGCCAAATCATCTCAACACCACCTTTCATTATATGTTTAGGCTAACGGGTAGCCGACAGAACACTTTGGATAAatgcgtctgctaaatggcatacatTTTATTATTGGGATATAATCAAATAACAAGGGGCCTGTTGCAACCATCTATGGCACTAGATGAACCATCAACGGCACGAGATTATCGCTAGCTGAtgttttgttaaatcatcacttCGTGTGAAATTCACCCACAAAACTGATCTCAATTGCAGCCATTATTGGTCACATCATTACTGCTCAATAAAAGATTATGTAAGTgttactgtcacgtcctgaccttagttccttttttacgtctctattttggtttggtcagggcgtgagttggggtgggaattGTTGTTAATTCTATGTTTTATTCTGTGtggtgtatttctgtgtttggcctggtatggttcccaatcagaggcaatcgttgtctctgattgagaaccatacttaggtagcctgttcccacctgtgtttgggggtagttgttttctgtctctgtaccaaacagaactgttttgtgttggtctatttttattattttgtcttagtggtctgagttaaaataaatattaacataaacacttaccacgctgcgttttggtccgatcttgactactcttcATCAGACGAAGAGGATCATTACAGTTACCTCAGTCCTTCTTGCAACCAAAGTCCTTTAAGATATGTTCAccctctggttggtattatcttcGGAACTATTTAGTCCTTTTTAACAGGCTAAGGGTGATTTATCTAGTGGACAAGCATTCCATACAACATAAATCAAGTATTTGCTCATttaccactgcaaatctactgtGGCAATTTACCCGACACTTTGTATGAATGAAAACTTTTGGTGTAGCctgttattatttttatttgtgttAGCCATTAAAATACTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1755370 False 2595 lncRNA 0.39 5 27196603 27205369
TU1755371 True 1197 lncRNA 0.38 2 27196603 27207572

Neighbor

gene id symbol gene type direction distance location
LOC110495935 fstl1 coding downstream 11155 27158978 ~ 27185448 (-)
LOC110495934 LOC106574305 coding downstream 40316 27152195 ~ 27156287 (-)
LOC110495932 LOC106574304 coding downstream 56116 27096980 ~ 27140487 (-)
LOC110495931 LOC106574302 coding downstream 113526 27065029 ~ 27083077 (-)
LOC110495928 LOC106574300 coding downstream 604408 26513620 ~ 26592195 (-)
LOC110495936 LOC106574306 coding upstream 7494 27215066 ~ 27219473 (-)
LOC110495938 LOC106574308 coding upstream 49914 27257486 ~ 27364364 (-)
LOC110495941 LOC100196748 coding upstream 181137 27388709 ~ 27395340 (-)
LOC118941127 NA coding upstream 316287 27523859 ~ 27526447 (-)
LOC110495945 LOC106574379 coding upstream 365959 27573531 ~ 27607434 (-)
G1533387 NA non-coding downstream 487 27195835 ~ 27196116 (-)
G1533383 NA non-coding downstream 3225 27193158 ~ 27193378 (-)
G1533380 NA non-coding downstream 6630 27189622 ~ 27189973 (-)
G1533367 NA non-coding downstream 25549 27170588 ~ 27171054 (-)
G1533288 NA non-coding downstream 81377 27035775 ~ 27115226 (-)
G1533415 NA non-coding upstream 33038 27240610 ~ 27240818 (-)
G1533418 NA non-coding upstream 35253 27242825 ~ 27243377 (-)
G1533419 NA non-coding upstream 56407 27263979 ~ 27264180 (-)
G1533420 NA non-coding upstream 57053 27264625 ~ 27264846 (-)
G1533424 NA non-coding upstream 68856 27276428 ~ 27276700 (-)
G1533378 NA other downstream 7054 27187622 ~ 27189549 (-)
G1531236 NA other downstream 1487729 25696539 ~ 25708874 (-)
LOC110495915 NA other downstream 1622932 25571910 ~ 25574981 (-)
G1531142 NA other downstream 1673423 25519421 ~ 25523180 (-)
G1530967 LOC106574270 other downstream 2045609 25150068 ~ 25150994 (-)
LOC110495948 LOC106574314 other upstream 546602 27754174 ~ 27798978 (-)
LOC110496785 LOC106574363 other upstream 653474 27839770 ~ 27914607 (-)
LOC110495955 LOC106574324 other upstream 827392 27995381 ~ 28092196 (-)
LOC110495963 LOC106574327 other upstream 1143806 28241494 ~ 28368147 (-)
G1536703 NA other upstream 3076800 30284372 ~ 30284762 (-)

Expression


Co-expression Network