G1532769


Basic Information

Item Value
gene id G1532769
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27330229 ~ 27330716 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1754678
tcaaatcaaatcaaatcaaatgtcatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagtttcgacaatgcagtaataaccaacaagtaatctaactaacaattccaaaactactgtcttgtacacagtgtaaggggataaagaatatgtacataaggatatatgaatgagtgatggtacagagcagcataggcaagatacagtagatggtatcgagtacagtatatacatatgagatgagtatgtaaacaaagtggcatagttaa
>TU1754679
catttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagtttcgacaatgcagtaataaccaacaagtaatctaactaacaattccaaaactactgtcttgtacacagtgtaaggggataaagaatatgtacataaggatatatgaatgagtgatggtacagagcagcataggcaagatacagtagatggtatcgagtacagtatatacatatgagatgagtatgtaaacaaagtggcatagttaaagtggctagtgatacatgtattacataaggatacagtcgatggtatagagtacagtatatacgtatgcatatgagatgaataatgtagggtaagtaacattata
>TU1754680
catttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagtttcgacaatgcagtaataaccaacaagtaatctaactaacaattccaaaactactgtcttgtacacagtgtaaggggataaagaatatgtacataaggatatatgaatgagtgatggtacagagcagcataggcaagatacagtagatggtatcgagtacagtatatacatatgagatgagtatgtaaacaaagtggcatagttaa
>TU1754681
catttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagtttcgacaatgcagtaataaccaacaagtaatctaactaacaattccaaaactactgtcttgtacacagtgtaaggggataaagaatatgtacataaggatatatgaatgagtgatggtacagagcagcataggcaagatacagtagatggtatcgagtacagtatatacatatgagatgagtatgtaaacaaagtggcatagttaaagtggctagtgatacatgtattacataaggatacagtcgatggtatagagtacagtatatacgtatgcatatgagatgaataatgtagggtaagtaacattatataaggtagcattgtttaaagtggctagtgatatatttaaatcatttcccatcaattcccattattaaagtggctggagttgagtcagtg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1754678 False 295 lncRNA 0.35 1 27330229 27330523
TU1754679 False 376 lncRNA 0.35 1 27330252 27330627
TU1754680 False 272 lncRNA 0.36 1 27330252 27330523
TU1754681 True 465 lncRNA 0.35 1 27330252 27330716

Neighbor

gene id symbol gene type direction distance location
LOC110495937 LOC106574307 coding upstream 73495 27246352 ~ 27256734 (+)
LOC110495930 LOC106574301 coding upstream 297517 26982981 ~ 27032712 (+)
kynu LOC106575231 coding upstream 1063097 26253121 ~ 26267132 (+)
bzw1a LOC106574295 coding upstream 1356910 25961717 ~ 25973319 (+)
LOC110496782 LOC106575224 coding upstream 1395250 25930184 ~ 25943678 (+)
LOC110495939 LOC106574310 coding downstream 64802 27395518 ~ 27457227 (+)
LOC110495942 pknx1 coding downstream 131723 27462439 ~ 27477815 (+)
LOC110495943 LOC106574311 coding downstream 156580 27487296 ~ 27520483 (+)
LOC110495944 LOC106574312 coding downstream 195736 27526452 ~ 27548466 (+)
LOC118941128 NA coding downstream 225687 27556403 ~ 27567412 (+)
G1532766 NA non-coding upstream 5184 27324788 ~ 27325045 (+)
G1532765 NA non-coding upstream 8104 27321921 ~ 27322125 (+)
G1532764 NA non-coding upstream 9107 27320905 ~ 27321122 (+)
G1532758 NA non-coding upstream 16576 27313339 ~ 27313653 (+)
G1532752 NA non-coding upstream 26991 27302937 ~ 27303238 (+)
G1532773 NA non-coding downstream 8118 27338834 ~ 27339097 (+)
G1532803 NA non-coding downstream 53834 27384550 ~ 27384864 (+)
G1532827 NA non-coding downstream 121742 27452458 ~ 27452941 (+)
G1532837 NA non-coding downstream 145565 27476281 ~ 27476540 (+)
G1532920 NA non-coding downstream 474539 27805255 ~ 27810891 (+)
G1532307 NA other upstream 572552 26757369 ~ 26757677 (+)
G1530923 LOC106574292 other upstream 1490494 25838506 ~ 25840353 (+)
G1530785 NA other upstream 1758883 25566471 ~ 25571346 (+)
LOC110495895 LOC106574270 other upstream 2174334 25133210 ~ 25157338 (+)
LOC110495947 LOC106575089 other downstream 305824 27629477 ~ 27750060 (+)
LOC110495958 LOC106574318 other downstream 616362 27943362 ~ 27958807 (+)
G1533121 LOC106574322 other downstream 644097 27974813 ~ 28038476 (+)
LOC110495972 NA other downstream 1402059 28732589 ~ 28735229 (+)
G1534488 LOC106574337 other downstream 1473312 28804028 ~ 28804673 (+)

Expression


Co-expression Network