G1533549 (LOC106575085)


Basic Information

Item Value
gene id G1533549
gene name LOC106575085
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27475296 ~ 27475888 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1755541
GGGACGAGCCATCGTGACGAGGGCCATCATTCTCTCTCAAATGTATGCACGTGCACACTCACATGCACGCAAGCATGCACAGACACCCTTGGAATAACCTAGCAAAGATTTACTCTGAGTTACAATACATTTAGTTATAGTTATTCTAATCTTCGGAATGGTTGGTACGAGGTGCAAGGTATTCTAGTGTTCAATTTACACCTTGAGGTGTTTTTACTCACCCCTATGTGCTGGAAGAGCCAGGTGCGCATGATGTTGGTGGCTGATTTGGGCAGGACGCCCCTCTTGTTGCTCTTGGGTGAGCTGTCCTCCTGGGTGAAGAAACTGCTCAGGTCCTGATTGAGCTGCAACTGGAGCTGTGTGTTGTTGATGCGTATTGTCTGGGGTGAGATAGCTTGTCCAACCACTTGTCCCTGAGGAGTGACTACTGTGATGGGCTGGTACACTGTACCACctgctcaaaacacacacacaaataaaacaaGTTATGACACGTTTTTGGTAACA

Function

NR:

description
homeobox protein PKNOX1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1755541 True 507 lncRNA 0.47 2 27475296 27475888

Neighbor

gene id symbol gene type direction distance location
LOC110495941 LOC100196748 coding downstream 79956 27388709 ~ 27395340 (-)
LOC110495938 LOC106574308 coding downstream 110932 27257486 ~ 27364364 (-)
LOC110495936 LOC106574306 coding downstream 255823 27215066 ~ 27219473 (-)
LOC110495935 fstl1 coding downstream 289848 27158978 ~ 27185448 (-)
LOC110495934 LOC106574305 coding downstream 319009 27152195 ~ 27156287 (-)
LOC118941127 NA coding upstream 47971 27523859 ~ 27526447 (-)
LOC110495945 LOC106574379 coding upstream 97643 27573531 ~ 27607434 (-)
LOC110495948 LOC106574314 coding upstream 278470 27754174 ~ 27798978 (-)
cpb2 cpb2 coding upstream 332286 27808174 ~ 27819821 (-)
LOC110496785 LOC106574363 coding upstream 363882 27839770 ~ 27914607 (-)
G1533550 LOC106574310 non-coding downstream 26150 27448536 ~ 27449146 (-)
G1533477 NA non-coding downstream 135603 27339456 ~ 27339693 (-)
G1533473 NA non-coding downstream 142462 27332563 ~ 27332834 (-)
G1533442 NA non-coding downstream 144772 27330257 ~ 27330524 (-)
G1533468 NA non-coding downstream 148225 27326824 ~ 27327071 (-)
G1533563 NA non-coding upstream 397 27476285 ~ 27476547 (-)
G1533584 NA non-coding upstream 26758 27502646 ~ 27588350 (-)
G1533579 NA non-coding upstream 63178 27539066 ~ 27579929 (-)
G1533568 NA non-coding upstream 66897 27542785 ~ 27544206 (-)
G1533679 NA non-coding upstream 178324 27654212 ~ 27654522 (-)
G1533378 NA other downstream 285747 27187622 ~ 27189549 (-)
G1531236 NA other downstream 1766422 25696539 ~ 25708874 (-)
LOC110495915 NA other downstream 1901625 25571910 ~ 25574981 (-)
G1531142 NA other downstream 1952116 25519421 ~ 25523180 (-)
G1530967 LOC106574270 other downstream 2324302 25150068 ~ 25150994 (-)
LOC110495955 LOC106574324 other upstream 559076 27995381 ~ 28092196 (-)
LOC110495963 LOC106574327 other upstream 875490 28241494 ~ 28368147 (-)
G1536703 NA other upstream 2808484 30284372 ~ 30284762 (-)

Expression


Co-expression Network