G1533060 (LOC106574321)


Basic Information

Item Value
gene id G1533060
gene name LOC106574321
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27985471 ~ 27988152 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1755005
TTAAGAGTCAagcattttattattattttttacagatTTCTACACATTGTTTACAAAATGTAAGGATATTGTGCTTCAAAATCTAAGTCTGATTTGAAAAATGTTTAATTTAGATGTTTTCAGCAATTCAACAAAAGCCAAACTTCATGAGTTAATGTCCTAGGGACCACAGTGCCTCCTGGCTTTGTAAGAAAGGTGTCAATGTAAAACCAAGTCATATGTACAAATATCAAATTCCCTAGCAAGAACCTTCTATCTTGAGTAGAAGAATATGAGAAGAGCCAACTGTTTTTCAGGGATGAGAGACTGAAATAGTATTACCAGAATTTACATACCCATTCAACTAAATCTATGGAGAAAGAAGACATTTTCCAATTTTGAGCGGGTGGAGAAGACAAATTATATGCGAGTGATTGAGTGGTTTTTAATGTTGTCAGGTCTCCCCAACCAAATTGGTATGTTAAAGAGGGATACTAATTAATTGCATAAATTTAAAAAAACGACATTTCTACTTAAAAAAAGTGATGTTTTGCACAATACAACTGTTTCCATGGAAAGGGTAATTGGATGAAAATCGCATTCATTAGATACATTTTCAATCATATTCAAAACTCTTATTTAAAAAACATCAAAACAGTAAACTGGTTATGACCTATTTCAGTTGCGTGGCATTCTGTTGTACAAACATTAAATTAGAGATAGCCACTGCATTCTATCATGGTAAAATAAATAGTTAAGAGTTCCATCTGTCCCCCAGTGCTATCTGAGTttagggtcatgttcagtaggcagGAAATGAAACAAATGTCcccaaaaagggggggggggggggggctctctgaccttgtccaataagaaacttcTATTTTCGTTTGCTATTGCGAAGTGGTGTAAAGCATTTCGCTAtgatgtgccctaatgaacacgacttGAGGGGCAGCCAAACCGAGATATGAATTGAATGTTTACTGTTTTTTCACTGGAATAAAAAAGCATTACATCTCTACTATTGTTCAGTGCAGGGACCAGTAGCCATCTGTGCAAAAATATgttgacatttttttaaaataactACAGTAAATGAGAGAATAATGACCCAAAAACTCCATGGCAAATCAAATGTAGGCTAGTTGTCTCTAGCTTGAGTGcaagtctgtttgtgccatcaatCCAACTCCTTCCCACTCATTGTCATGCAATGTTTGGCTTGACAAGGACAGCAAtagagttggcaagagcacaaacagatctgggaccaggctaaattGCCTCCCTTCTTAAAgcgctacagtacagtactgactTGTGGAGACTTTCTCGACTTTCTTACTTTCTCAACACATTCTCAAATAGCTATGATGTCACATCAAAACTTAACTCTTCCAACTAAAAACTTGACTTAGCCCAACTCCCACAAGCCCCCATTTTCAAGCATAGGTAAAGAGTaggtagcctggGTAGTAACAAACGCTGTGTGGGTATGGTAGCCATGCATAGACatatttttgtgtatttttttaaaccaaacAAGAAAGATTAGTTTGCCATGTACACACCTTCTAGACCTCAAACACCTCCTTGACTTTGGAAACACCCATTGTAAAGCGCTGTGATCCAACCTCCTTTGAAAAATCTACGTTAGAAAAGATACGAGGGTCTGAGCACAGAACTCAGATCTCACGCTGTTATGAGTTCATCTCACTTATTTACACCAATTCAGCTGGCAAACCACTGTACAAAATGTGCTACTCACCTTTAGGGGGCCTTATCTCAAATGTAGACAGTATATGCAACAAAACAATGCACATACAAAACAAAATCAATCCTTTCACTGCAACGGACGCATTCTGAAAAATCGGTTGGTTTAATTTGGAGTCCGGCGTCATAGTCATTGCAGGGTAACGATTGTGGCTTGTTTTGTCCGTCTGTGTCTAGCTGGGCATGAGGAGAGATTGGGCTTTCTCGATGGGCAGCATGAATTGTGGGCAGCAGGGTCCGACACGGAGGGTTGCCATGCCAGTCAGACGGGAGTCCAGGAGCATTGGGATGGCTCCGtagaggagggggacaggggCCAGCCACGGTGCTGAGGGGTGACCAGGGGTTCCAGGCTCAAGTAGTGGAGCAGAGGTGTTCGATGGGCCGCACTGGATGGAGCCAAGAGGGAGGCTCCCCACTGTAACTGGGCAGCCGGGGTAGTGCAGAGAGGAGGCGGACAAGGCTGGTTCAGTGTCAGGCTGGGGGTGTGGGTCAGTGTGGCTTAGGGAAGTGAGGAGAGAGCCCCATAGACACAGTATAGAGGTCTGGGAGGTGGTTGGCGAGCCGTGGTTGTCGTGGGTGTGGAGAATGCCAGGTCTGCGTTTGTGACTGTCGTTGCCCAAGACGCAGCAGCGAGGGAGGTCGGATGCTGGACTTGGGGTCTCTGGGACTGGGAGCAggcctagtggtggtggtggagagaggCTGGAGCTAGGCAGGTGGACTTGGCTGACTGGGGACAGGGGCTGGCTGCTCCTGGGGAGGCTGGTGGCGATAAGGCCCGCGACACTGGTCAGATACAC

Function

NR:

description
protein CNPPD1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1755005 True 2561 lncRNA 0.44 3 27985471 27988152

Neighbor

gene id symbol gene type direction distance location
LOC110495958 LOC106574318 coding upstream 38294 27943362 ~ 27958807 (+)
LOC118941047 mdh1b coding upstream 44673 27938032 ~ 27940798 (+)
si:dkey-1h24.6 LOC106574316 coding upstream 54133 27925782 ~ 27931338 (+)
LOC110495952 NA coding upstream 153566 27829955 ~ 27843859 (+)
alg11 alg11 coding upstream 156129 27820568 ~ 27829342 (+)
LOC110496786 NA coding downstream 486197 28474349 ~ 28479668 (+)
LOC110495966 LOC106575106 coding downstream 533328 28521480 ~ 28595208 (+)
LOC110496787 LOC106575108 coding downstream 645659 28633811 ~ 28644214 (+)
LOC110495968 LOC106574333 coding downstream 658429 28646581 ~ 28672693 (+)
LOC110495972 NA coding downstream 744437 28732589 ~ 28735229 (+)
G1533122 NA non-coding upstream 4189 27978117 ~ 27981282 (+)
G1533123 NA non-coding upstream 4853 27979982 ~ 27980618 (+)
G1533099 NA non-coding upstream 61596 27921605 ~ 27923875 (+)
G1533062 NA non-coding downstream 7350 27995502 ~ 28053987 (+)
G1533155 NA non-coding downstream 40804 28028956 ~ 28033896 (+)
G1533073 NA non-coding downstream 66945 28055097 ~ 28116203 (+)
G1533948 NA non-coding downstream 155820 28143972 ~ 28144778 (+)
G1534045 NA non-coding downstream 275559 28263711 ~ 28270519 (+)
LOC110495947 LOC106575089 other upstream 333646 27629477 ~ 27750060 (+)
G1532307 NA other upstream 1227794 26757369 ~ 26757677 (+)
LOC110496782 LOC106575224 other upstream 2041793 25930184 ~ 25943678 (+)
G1530923 LOC106574292 other upstream 2145736 25838506 ~ 25840353 (+)
G1534488 LOC106574337 other downstream 815876 28804028 ~ 28804673 (+)
G1534495 NA other downstream 824677 28812829 ~ 28813103 (+)
G1536720 NA other downstream 2308979 30297131 ~ 30297346 (+)
G1537251 NA other downstream 2834356 30822508 ~ 30828046 (+)

Expression


Co-expression Network