G1533948


Basic Information

Item Value
gene id G1533948
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28143972 ~ 28144778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1755973
tttttgtcctgctcaatgcatttttttgtcctgctcaatgcatttttttgtcctgcccaatgcatttttttgtcctactcaatgcatttttttgtcctgctcaatgcatttttttgtcctgctcaatgcatttttttGTCCTACTCAATGCATTTTTTTGTCCTACTCAATGCATTTTTTTGTCCTGCTCAATGCATTTTTTTGTCCTGCTCAATGCATTTTTTTGTCCTACTCAATGCATTTTTTTGTCCTGCTCAATGCATTTTTTTGTCCTGCTCAATCCATCCGCTCACTTTGAAATAAATCTTaaatcaccaaagctttattaaaacATCAAGTTTGAGA
>TU1755974
tttttgtcctgctcaatgcatttttttgtcctgctcaatgcatttttttgtcctgcccaatgcatttttttgtcctactcaatgcatttttttgtcctgctcaatgcaTTTTTTTGTCCTGCTCAATGCATTTTTTTGTCCTGCTCAATGCATTTTTTGGTCCTACTCAATGCATTTTTTTGTCCTACTCAATGCATTTTTTTGTCCTGCTCAATGCATTTTTTTGTCCTGCTCAATGCATTTTTTTGTCCTACTCAATGCATTTTTTTGTCTTGCTCAATGCATTTTTTTGTCTTGCTCAATGCATTTTTTTGTCCTACTC

Function

NR:

description
PREDICTED: vegetative cell wall protein gp1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1755973 False 345 lncRNA 0.34 3 28143972 28144778
TU1755974 True 322 lncRNA 0.35 2 28143972 28144623

Neighbor

gene id symbol gene type direction distance location
LOC110495958 LOC106574318 coding upstream 196795 27943362 ~ 27958807 (+)
LOC118941047 mdh1b coding upstream 203174 27938032 ~ 27940798 (+)
si:dkey-1h24.6 LOC106574316 coding upstream 212634 27925782 ~ 27931338 (+)
LOC110495952 NA coding upstream 312067 27829955 ~ 27843859 (+)
alg11 alg11 coding upstream 314630 27820568 ~ 27829342 (+)
LOC110496786 NA coding downstream 329571 28474349 ~ 28479668 (+)
LOC110495966 LOC106575106 coding downstream 376702 28521480 ~ 28595208 (+)
LOC110496787 LOC106575108 coding downstream 489033 28633811 ~ 28644214 (+)
LOC110495968 LOC106574333 coding downstream 501803 28646581 ~ 28672693 (+)
LOC110495972 NA coding downstream 587811 28732589 ~ 28735229 (+)
G1533073 NA non-coding upstream 27769 28055097 ~ 28116203 (+)
G1533062 NA non-coding upstream 89985 27995502 ~ 28053987 (+)
G1533155 NA non-coding upstream 110076 28028956 ~ 28033896 (+)
G1533060 LOC106574321 non-coding upstream 155820 27985471 ~ 27988152 (+)
G1533122 NA non-coding upstream 162690 27978117 ~ 27981282 (+)
G1534045 NA non-coding downstream 118933 28263711 ~ 28270519 (+)
G1534173 NA non-coding downstream 225053 28369831 ~ 28370449 (+)
G1534194 NA non-coding downstream 241252 28386030 ~ 28386294 (+)
G1534339 NA non-coding downstream 367240 28512018 ~ 28515959 (+)
G1534330 NA non-coding downstream 450868 28595646 ~ 28597306 (+)
G1533121 LOC106574322 other upstream 105496 27974813 ~ 28038476 (+)
LOC110495947 LOC106575089 other upstream 492147 27629477 ~ 27750060 (+)
G1532307 NA other upstream 1386295 26757369 ~ 26757677 (+)
LOC110496782 LOC106575224 other upstream 2200294 25930184 ~ 25943678 (+)
G1534488 LOC106574337 other downstream 659250 28804028 ~ 28804673 (+)
G1534495 NA other downstream 668051 28812829 ~ 28813103 (+)
G1536720 NA other downstream 2152353 30297131 ~ 30297346 (+)
G1537251 NA other downstream 2677730 30822508 ~ 30828046 (+)

Expression


Co-expression Network