G1534330


Basic Information

Item Value
gene id G1534330
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28595646 ~ 28597306 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1756383
tcacaagtcctcaactggcagcttcattaaatagaacccacaaaacaccagcctCAAAGTCAACAGTTTTAAAGGCGACTCCGGaatgctggacttctaggcagagttcctctgtccagtgtctgttatttTGCTCATCTTCATCTttcctttttattggccagtcagatatggctttttctttgcaactctgcctagaaggccagcatcccggagttgcctcttcactgttgacggtAAGACTggggttttgcgggtactatttaatgaagctgccagttgaggacttgaggcatctgtttctcaaactagacacactaatgttctTGTCCTCATGCTCAGTTGtacactggggcctcccactcctctttctattctggttagagacagtttgtgctgttctgtgaagggagtagtacacagcgttgtacgagatcttcagtttcttggaaatttctcacatgtaatagccttcatttctcagaacaggaatagactgacgagtttcagaagaaggtctttgtttctggcaattttgagcctgtaatcgaacccacaaatgctgatgctccagatacacaacaagtctaaagaaggccagttgtattgcttctttaatcagaacaacagttttcagctgtgctaatataattgcaaaagggttttctaatgatcaattagcctttaaaattataaacttggattagctaacaacgtgccattggaacacatgtTCCAtgtatgtaataatgtaatatgcctatgtagatattccataaaaagaagtcatttacaacaatgtctacactgtatttctgatcaattttatgttattttaatggacaaaaaaatgtgtttttctttcaaaaacaaggacatttctaagaccccaaacttttgaactgttgtgtgtgtgtgtatgtacatatatatatataacgctAAAAACTTTACTATTTTTATTCATACACAAATTATATATCGTTTTAAGTTTAGTATTTTTGGGCGTTTTTAAAAGGTGAGGTCAAAAGGATCAACTGCTGTACAGAAAGCAGTCGTGTCCTAAGCCCCATTTAGAATACTTTAATAACACACCCTTCCTTACTTACTGATCTAACACAATTTGTTAAATTTAAGCAACAGTTCTATCATATGGCTTTCTCTAATCCAGCCATGGCAGATTAGGTATTTCTTCAAGGAAGGGGGAAAGCAATGATGCATTTTGTTAAAGTATTGGAACAGGGCCCTATTCTGTCCTTGTAGAGAGCTTGACGATGAGGGTTGTGGCCGTCATGCTATGCTGAATGGTCCCTAAAAGGACTTCAGCCAGGGTCGTATTCACAAGGAAGCAAATGTGCTGAAACGGGAAGGGGCtaactgaacttgtccaataagaaacgcttgtttttgtttaatgttgcaaaacgtttcgcTACGGTGTTCACTATTGAATATTACCCAGGTAATGAATTGAGACTGCTTTGTCATCAGAAATGCAGTATCCCATCTactttacaaaaaatatatatagagaaaAAGACAAGACTCATTGGTTTATTAGTTTTGATGTAACCATTTTTCTGTTTTCTTTGTGAGTATAGTTTGTGCTATTTTATGTTACAGCAAGATAGTGTAAAATCTAttgaaataaagaaagaaaa
>TU1756381
CCTCATGCTCAGTTGtacactggggcctcccactcctctttctattctggttagagacagtttgtgctgttctgtgaagggagtagtacacagcgttgtacgagatcttcagtttcttggaaatttctcacatgtaatagccttcatttctcagaacaggaatagactgacgagtttcagaagaaggtctttgtttctggcaattttgagcctgtaatcgaacccacaaatgctgatgctccagatacacaacaagtctaaagaaggccagttgtattgcttctttaatcagaacaacagttttcagctgtgctaatataattgcaaaagggttttctaatgatcaattagcctttaaaattataaacttggattagctaacaacgtgccattggaacacatgtTCCAtgtatgtaataatgtaatatgcctatgtagatattccataaaaagaagtcatttacaacaatgtctacactgtatttctgatcaattttatgttattttaatggacaaaaaaatgtgtttttctttcaaaaacaaggacatttctaagaccccaaacttttgaactgttgtgtgtgtgtgtatgtacatatatatatataacgctAAAAACTTTACTATTTTTATTCATACACAAATTATATATCGTTTTAAGTTTAGTATTTTTGGGCGTTTTTAAAAGGTGAGGTCAAAAGGATCAACTGCTGTACAGAAAGCAGTCGTGTCCTAAGCCCCATTTAGAATACTTTAATAACACACCCTTCCTTACTTACTGATCTAACACAATTTGTTAAATTTAAGCAACAGTTCTATCATATGGCTTTCTCTAATCCAGCCATGGCAGATTAGGTATTTCTTCAAGGAAGGGGGAAAGCAATGATGCATTTTGTTAAAGTATTGGAACAGGGCCCTATTCTGTCCTTGTAGAGAGCTTGACGATGAGGGTTGTGGCCGTCATGCTATGCTGAATGGTCCCTAAAAGGACTTCAGCCAGGGTCGTATTCACAAGGAAGCAAATGTGCTGAAACGGGAAGGGGCtaactgaacttgtccaataagaaacgcttgtttttgtttaatgttgcaaaacgtttcgcTACGGTGTTCACTATTGAATATTACCCAGGTAATGAATTGAGACTGCTTTGTCATCAGAAATGCAGTATCCCATCTactttacaaaaaatatatatagagaaaAAGACAAGACTCATTGGTTTATTAGTTTTGATGTAACCATTTTTCTGTTTTCTTTGTGAGTATAGTTTGTGCTATTTTATGTTACAGCAAGATAGTGTAAAATCTAttgaaataaagaaagaaaa
>TU1756384
CCTCATGCTCAGTTGtacactggggcctcccactcctctttctattctggttagagacagtttgtgctgttctgtgaagggagtagtacacagcgttgtacgagatcttcagtttcttggaaatttctcacatgtaatagccttcatttctcagaacaggaatagactgacgagtttcagaagaaggtctttgtttctggcaattttgagcctgtaatcgaacccacaaatgctgatgctccagatacacaacaagtctaaagaaggccagttgtattgcttctttaatcagaacaacagttttcagctgtgctaatataattgcaaaagggttttctaatgatcaattagcctttaaaattataaacttggattagctaacaacgtgccattggaacacatgtTCCAtgtatgtaataatgtaatatgcctatgtagatattccataaaaagaagtcatttacaacaatgtctacactgtatttctgatcaattttatgttattttaatggacaaaaaaatgtgtttttctttcaaaaacaaggacatttctaagacccc
>TU1756382
GTTTAGTATTTTTGGGCGTTTTTAAAAGGTGAGGTCAAAAGGATCAACTGCTGTACAGAAAGCAGTCGTGTCCTAAGCCCCATTTAGAATACTTTAATAACACACCCTTCCTTACTTACTGATCTAACACAATTTGTTAAATTTAAGCAACAGTTCTATCATATGGCTTTCTCTAATCCAGCCATGGCAGATTAGGTATTTCTTCAAGGAAGGGGGAAAGCAATGATGCATTTTGTTAAAGTATTGGAACAGGGCCCTATTCTGTCCTTGTAGAGAGCTTGACGATGAGGGTTGTGGCCGTCATGCTATGCTGAATGGTCCCTAAAAGGACTTCAGCCAGGGTCGTATTCACAAGGAAGCAAATGTGCTGAAACGGGAAGGGGCtaactgaacttgtccaataagaaacgcttgtttttgtttaatgttgcaaaacgtttcgcTACGGTGTTCACTATTGAATATTACCCAGGTAATGAATTGAGACTGCTTTGTCATCAGAAATGCAGTATCCCATCTactttacaaaaaatatatatagagaaaAAGACAAGACTCATTGGTTTATTAGTTTTGATGTAACCATTTTTCTGTTTTCTTTGTGAGTATAGTTTGTGCTATTTTATGTTACAGCAAGATAGTGTAAAATCTAttgaaataaagaaagaaaa

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1756383 False 1661 lncRNA 0.37 1 28595646 28597306
TU1756381 False 1331 lncRNA 0.36 1 28595976 28597306
TU1756384 False 561 lncRNA 0.36 1 28595976 28596536
TU1756382 True 671 lncRNA 0.37 1 28596636 28597306

Neighbor

gene id symbol gene type direction distance location
LOC110495966 LOC106575106 coding upstream 438 28521480 ~ 28595208 (+)
LOC110496786 NA coding upstream 115978 28474349 ~ 28479668 (+)
LOC110495958 LOC106574318 coding upstream 648469 27943362 ~ 27958807 (+)
LOC118941047 mdh1b coding upstream 654848 27938032 ~ 27940798 (+)
si:dkey-1h24.6 LOC106574316 coding upstream 664308 27925782 ~ 27931338 (+)
LOC110496787 LOC106575108 coding downstream 36505 28633811 ~ 28644214 (+)
LOC110495968 LOC106574333 coding downstream 49275 28646581 ~ 28672693 (+)
LOC110495972 NA coding downstream 135283 28732589 ~ 28735229 (+)
zgc:174945 LOC106574385 coding downstream 1584926 30182232 ~ 30186368 (+)
cckbra LOC106575124 coding downstream 1636385 30233691 ~ 30254904 (+)
G1534339 NA non-coding upstream 79687 28512018 ~ 28515959 (+)
G1534194 NA non-coding upstream 209352 28386030 ~ 28386294 (+)
G1534173 NA non-coding upstream 225197 28369831 ~ 28370449 (+)
G1534045 NA non-coding upstream 325127 28263711 ~ 28270519 (+)
G1533948 NA non-coding upstream 450868 28143972 ~ 28144778 (+)
G1534380 NA non-coding downstream 13622 28610928 ~ 28611162 (+)
G1534385 NA non-coding downstream 18976 28616282 ~ 28616493 (+)
G1534388 NA non-coding downstream 20917 28618223 ~ 28618476 (+)
G1533121 LOC106574322 other upstream 557170 27974813 ~ 28038476 (+)
LOC110495947 LOC106575089 other upstream 943821 27629477 ~ 27750060 (+)
G1532307 NA other upstream 1837969 26757369 ~ 26757677 (+)
LOC110496782 LOC106575224 other upstream 2651968 25930184 ~ 25943678 (+)
G1534488 LOC106574337 other downstream 206722 28804028 ~ 28804673 (+)
G1534495 NA other downstream 215523 28812829 ~ 28813103 (+)
G1536720 NA other downstream 1699825 30297131 ~ 30297346 (+)
G1537251 NA other downstream 2225202 30822508 ~ 30828046 (+)

Expression


Co-expression Network