G1534403 (LOC106574334)


Basic Information

Item Value
gene id G1534403
gene name LOC106574334
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28672838 ~ 28676035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1756471
ACATGATTTAGCATAAGAAAACAATGTTCTCACATTTATTAAATAGTACATTATAGTGGTGACATGTAGGACAGAGACAACGTCATCATGGCCAGTGTTCACTTGGCCACTTCCTGCAGCTGGGGCTCTGGAGAAGAGAAAAGGGAGATTGTGAGTAATgttgggtcgtattcattagtgcatATCGTAGTAACACTTggcaaaatgaaaaaaaaaaagcatttaatgttctgtgtatatatatatatatatatatgtttttcgtttggtgcctaatgaatcaTTTAAACCAcctgtgtcaaactcattcccaTGGAGGGACGACTGGCTGGGTTTTccctcctcccttgtacttgatgaattaaggtcactaattagcaAAGAACTCCCCTtactggttgtctaggtcttaattgaaaggagaaaaaaaaaaaaacagacactaGGCCCACCATGGAATGACTGACACCCCTGATTTACGCATAGAATGATTAAGCTATGTAGGGTGAGATGGTGGTATTACAATTTAGTCTGACTGAGCTACCAATAAATGTTACTACTGCTGGGCAACATGGATAAAATCCATCTCACAATAACGAGAAATCAAACAATACGTTAAAATGAATTTACACCCCAGTTACTTTTTATAGTACCCGTTAAACTACATTAAATGTCATAGCTATCTATTGTCCCCTTAGCAATTTCCCATATTTCAAAAATCACATCTCTACTGTAGGCAACTTATCATTATTATTGATATCAGTAAAATGTCTGAACATTTTcagtttatcgtcccagctctatACTGCAGTGCATGGCTTTGACGAACCTGTAAATTTGAAGTCAGGGAATTTGGTGAGGTCACCGGTCCCATATAACCTCTGTAGTTTGGTGATCTCCTCTGAGACACCCTTTTCGTAAGAGGGGCCTGCATCAACAATCCCACCTGCTGCAgccTTGCTCTTGGTGCTGTAGTCGCGGATCTTATCTAGGAATAGTTTCTGGATAGGGTCCAAGTCCTTGGCCCGGTTGAAGAGAACAGCAGACAGGCCGATATTCCTGCGCAGTGTCAATGACACGGCGGAGCGGAACAGCGAGGACAGACGGAATAGTTTATGAAGCGCCATACTTGAATTTGACACTCGTTCACAGAGTGATTACTTCCAATGTGATACGCCGCTTTGCATTGTGGGTATTTTTTCAATCGGTCATGTTCGCGAACATCAACATGCGTCCTGGCTGCGCATCTCGACAGCGACGTTCTTTTCAGCACTACACATTTTTTATCATGGCAATGTGCACAGCTTTCATACCACTGACATAATAAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1756471 True 1328 lncRNA 0.41 3 28672838 28676035

Neighbor

gene id symbol gene type direction distance location
LOC110495968 LOC106574333 coding upstream 145 28646581 ~ 28672693 (+)
LOC110496787 LOC106575108 coding upstream 28742 28633811 ~ 28644214 (+)
LOC110495966 LOC106575106 coding upstream 77630 28521480 ~ 28595208 (+)
LOC110496786 NA coding upstream 193170 28474349 ~ 28479668 (+)
LOC110495958 LOC106574318 coding upstream 725661 27943362 ~ 27958807 (+)
LOC110495972 NA coding downstream 56554 28732589 ~ 28735229 (+)
zgc:174945 LOC106574385 coding downstream 1506197 30182232 ~ 30186368 (+)
cckbra LOC106575124 coding downstream 1557656 30233691 ~ 30254904 (+)
LOC118940974 LOC108266561 coding downstream 1842585 30518620 ~ 30519442 (+)
LOC110496792 cars2 coding downstream 1858979 30535014 ~ 30539520 (+)
G1534388 NA non-coding upstream 54362 28618223 ~ 28618476 (+)
G1534385 NA non-coding upstream 56345 28616282 ~ 28616493 (+)
G1534380 NA non-coding upstream 61676 28610928 ~ 28611162 (+)
G1534455 NA non-coding downstream 84938 28760973 ~ 28761471 (+)
G1534456 NA non-coding downstream 85557 28761592 ~ 28762769 (+)
G1534458 NA non-coding downstream 92781 28768816 ~ 28769054 (+)
G1534461 LOC106574337 non-coding downstream 95266 28771301 ~ 28774539 (+)
G1534465 NA non-coding downstream 101755 28777790 ~ 28778162 (+)
G1533121 LOC106574322 other upstream 634362 27974813 ~ 28038476 (+)
LOC110495947 LOC106575089 other upstream 1021013 27629477 ~ 27750060 (+)
G1532307 NA other upstream 1915161 26757369 ~ 26757677 (+)
LOC110496782 LOC106575224 other upstream 2729160 25930184 ~ 25943678 (+)
G1534488 LOC106574337 other downstream 127993 28804028 ~ 28804673 (+)
G1534495 NA other downstream 136794 28812829 ~ 28813103 (+)
G1536720 NA other downstream 1621096 30297131 ~ 30297346 (+)
G1537251 NA other downstream 2146473 30822508 ~ 30828046 (+)

Expression


Co-expression Network