G1534468


Basic Information

Item Value
gene id G1534468
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28779797 ~ 28781843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1756550
catcgtcattgtCATACTAGCAGAACGGACACTACAAGTCTtgctaacataggtagtgGACTAGTGGAAGACAGCACTCCAAAGTACTGTACCCTCACTCACACTCTTTCACTCACCCTCTGCGAGAACACCACATAGTAGCCTGTGCCCTTAGCCCGGCATGTCAGCTTGCACACATCTTTGGGGAGCACTCCTGCGAACTTGGGTACCCACTCCACAAAGGTCTTCATCCCCTTAGGGTCTGTCTGGGGGCCATTCCGCACCTCACACTGCTCCTGGCGGAAACTCTTACCTAGAGGAGGAAAGTTCCACCACACGTTAGAGTGGGAACAttagaattgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

NR:

description
PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 5 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1756550 True 400 lncRNA 0.51 3 28779797 28781843

Neighbor

gene id symbol gene type direction distance location
LOC110495972 NA coding upstream 44568 28732589 ~ 28735229 (+)
LOC110495968 LOC106574333 coding upstream 107104 28646581 ~ 28672693 (+)
LOC110496787 LOC106575108 coding upstream 135701 28633811 ~ 28644214 (+)
LOC110495966 LOC106575106 coding upstream 184589 28521480 ~ 28595208 (+)
LOC110496786 NA coding upstream 300129 28474349 ~ 28479668 (+)
zgc:174945 LOC106574385 coding downstream 1400389 30182232 ~ 30186368 (+)
cckbra LOC106575124 coding downstream 1451848 30233691 ~ 30254904 (+)
LOC118940974 LOC108266561 coding downstream 1736777 30518620 ~ 30519442 (+)
LOC110496792 cars2 coding downstream 1753171 30535014 ~ 30539520 (+)
LOC110495985 LOC106588159 coding downstream 1944964 30726807 ~ 30749687 (+)
G1534466 NA non-coding upstream 1206 28778300 ~ 28778591 (+)
G1534465 NA non-coding upstream 1635 28777790 ~ 28778162 (+)
G1534461 LOC106574337 non-coding upstream 5258 28771301 ~ 28774539 (+)
G1534458 NA non-coding upstream 10743 28768816 ~ 28769054 (+)
G1534456 NA non-coding upstream 17028 28761592 ~ 28762769 (+)
G1534476 adamts5 non-coding downstream 7006 28788849 ~ 28789147 (+)
G1534477 NA non-coding downstream 7692 28789535 ~ 28789805 (+)
G1534478 NA non-coding downstream 8155 28789998 ~ 28791123 (+)
G1534480 NA non-coding downstream 10882 28792725 ~ 28792934 (+)
G1534481 NA non-coding downstream 11744 28793587 ~ 28793846 (+)
G1533121 LOC106574322 other upstream 741321 27974813 ~ 28038476 (+)
LOC110495958 LOC106574318 other upstream 829575 27943362 ~ 27958807 (+)
LOC110495947 LOC106575089 other upstream 1127972 27629477 ~ 27750060 (+)
G1532307 NA other upstream 2022120 26757369 ~ 26757677 (+)
G1534488 LOC106574337 other downstream 22185 28804028 ~ 28804673 (+)
G1534495 NA other downstream 30986 28812829 ~ 28813103 (+)
G1536720 NA other downstream 1515288 30297131 ~ 30297346 (+)
G1537251 NA other downstream 2040665 30822508 ~ 30828046 (+)
LOC110496006 LOC106588175 other downstream 2787048 31568375 ~ 31572239 (+)

Expression


Co-expression Network