G1534893


Basic Information

Item Value
gene id G1534893
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28981716 ~ 29032811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1757012
gtcgcttggggtatgtctctatcagttttgcacatcgagagactgaaattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttgaccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttttatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgatgaagaaaatcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaatgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgac

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1757012 True 660 lncRNA 0.42 2 28981716 29032811

Neighbor

gene id symbol gene type direction distance location
LOC110495972 NA coding upstream 246487 28732589 ~ 28735229 (+)
LOC110495968 LOC106574333 coding upstream 309023 28646581 ~ 28672693 (+)
LOC110496787 LOC106575108 coding upstream 337620 28633811 ~ 28644214 (+)
LOC110495966 LOC106575106 coding upstream 386508 28521480 ~ 28595208 (+)
LOC110496786 NA coding upstream 502048 28474349 ~ 28479668 (+)
zgc:174945 LOC106574385 coding downstream 1149421 30182232 ~ 30186368 (+)
cckbra LOC106575124 coding downstream 1200880 30233691 ~ 30254904 (+)
LOC118940974 LOC108266561 coding downstream 1485809 30518620 ~ 30519442 (+)
LOC110496792 cars2 coding downstream 1502203 30535014 ~ 30539520 (+)
LOC110495985 LOC106588159 coding downstream 1693996 30726807 ~ 30749687 (+)
G1534851 NA non-coding upstream 46515 28934727 ~ 28935201 (+)
G1534848 NA non-coding upstream 48106 28933379 ~ 28933610 (+)
G1534842 NA non-coding upstream 52025 28929408 ~ 28929691 (+)
G1534822 NA non-coding upstream 63910 28917436 ~ 28917806 (+)
G1534818 NA non-coding upstream 66282 28915170 ~ 28915434 (+)
G1534974 NA non-coding downstream 49 29032860 ~ 29033310 (+)
G1534975 NA non-coding downstream 656 29033467 ~ 29033829 (+)
G1535012 NA non-coding downstream 22721 29055532 ~ 29055755 (+)
G1535037 NA non-coding downstream 38181 29070992 ~ 29071284 (+)
G1535048 NA non-coding downstream 44944 29077755 ~ 29077964 (+)
G1534495 NA other upstream 168613 28812829 ~ 28813103 (+)
G1534488 LOC106574337 other upstream 177043 28804028 ~ 28804673 (+)
G1533121 LOC106574322 other upstream 943240 27974813 ~ 28038476 (+)
LOC110495958 LOC106574318 other upstream 1031494 27943362 ~ 27958807 (+)
G1536720 NA other downstream 1264320 30297131 ~ 30297346 (+)
G1537251 NA other downstream 1789697 30822508 ~ 30828046 (+)
LOC110496006 LOC106588175 other downstream 2536080 31568375 ~ 31572239 (+)
LOC110496008 LOC106588176 other downstream 2545356 31578096 ~ 31580320 (+)
G1538208 LOC106588182 other downstream 2720899 31753710 ~ 31754191 (+)

Expression


Co-expression Network